RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 TTF1Q15361 905 aaPredicted RBP12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 SLC44A5Q8NCS7 719 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 DYNLL2Q96FJ2 89 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 RIOK1Q9BRS2 568 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 DHX36Q9H2U1 1008 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 AS3MTQ9HBK9 375 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 ZCCHC17Q9NP64 241 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 MCM9Q9NXL9 1143 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 HERC5Q9UII4 1024 aaKnown RBP12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 ZBTB21Q9ULJ3 1066 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 PCDHB15Q9Y5E8 787 aa12.49□□□□□ -0.41
SHKBP1-210ENST00000595874 LOC285556D6RIA3 1793 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 TCRBV5S4A2TA0A5A2 114 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 TNPO2O14787 897 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 FCGRTP55899 365 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 RRP1P56182 461 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 SAMD1Q6SPF0 538 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 CLEC10AQ8IUN9 316 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 FOXP4Q8IVH2 680 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 ZNF333Q96JL9 665 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 FEZ1Q99689 392 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 TMEM106CQ9BVX2 250 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 CHMP4BQ9H444 224 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 TMOD4Q9NZQ9 345 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 SRRDQ9UH36 339 aa12.48□□□□□ -0.41
SHKBP1-210ENST00000595874 ADD2P35612 726 aa12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 CERKLQ49MI3 558 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 ACER1Q8TDN7 264 aa12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 OTUD7AQ8TE49 926 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 ARMC5Q96C12 935 aa12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 PAGR1Q9BTK6 254 aa12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 CRNKL1Q9BZJ0 848 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 ASCC2Q9H1I8 757 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 BAZ2AQ9UIF9 1905 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-210ENST00000595874 ASNSP08243 561 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 ATP5JP18859 108 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 IRX3P78415 501 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 SEPT2Q15019 361 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 ABCB5Q2M3G0 1257 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 NBPF11Q86T75 865 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 TTC6Q86TZ1 520 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 P2RX7Q99572 595 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 HAUS7Q99871 368 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 SERPINB13Q9UIV8 391 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 PNMA3Q9UL41 463 aa12.46□□□□□ -0.41
SHKBP1-210ENST00000595874 DDX60LQ5H9U9 1706 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 USP17L10C9JJH3 530 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 HOXD10P28358 340 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 GRK4P32298 578 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 SHMT1P34896 483 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 FLT3LGP49771 235 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 BACE1P56817 501 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 PROCA1Q8NCQ7 364 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 PUS7LQ9H0K6 701 aaKnown RBP12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 EMILIN3Q9NT22 766 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 SLC4A4Q9Y6R1 1079 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 TNRC18O15417 2968 aaPredicted RBP12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 MYH7P12883 1935 aa12.45□□□□□ -0.42
SHKBP1-210ENST00000595874 ADCY3O60266 1144 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 ATP2B2Q01814 1243 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 TRIM32Q13049 653 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 WDR18Q9BV38 432 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 UNC93B1Q9H1C4 597 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 DCTPP1Q9H773 170 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 TXNRD2Q9NNW7 524 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 CABP5Q9NP86 173 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 DCP1AQ9NPI6 582 aaPredicted RBP12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 ECHDC1Q9NTX5 307 aa12.44□□□□□ -0.42
SHKBP1-210ENST00000595874 RAD21O60216 631 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 CCL5P13501 91 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 AKR1B1P15121 316 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 CYP2B6P20813 491 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 GUCY1A2P33402 732 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 PABPC4Q13310 644 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 Q3C1V9 767 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 SH3D19Q5HYK7 790 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 WDR78Q5VTH9 848 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 TATDN1Q6P1N9 297 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 USP17L2Q6R6M4 530 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 METTL16Q86W50 562 aaKnown RBP12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 RNF208Q9H0X6 261 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 SLC45A1Q9Y2W3 748 aa12.43□□□□□ -0.42
SHKBP1-210ENST00000595874 USP17L12C9JPN9 530 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 USP17L21D6R901 530 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 M0R2C6 588 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 INHAP05111 366 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 HERVK_113P62684 666 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 COA7Q96BR5 231 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 CHMP4CQ96CF2 233 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 CWC22Q9HCG8 908 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 RBBP6Q7Z6E9 1792 aaKnown RBP12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 MYH8P13535 1937 aa12.42□□□□□ -0.42
SHKBP1-210ENST00000595874 A0A1W2PRG0 241 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 MINDY4BA8MYZ0 360 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 C19orf81C9J6K1 198 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 PRMT2P55345 433 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 UBXN2AP68543 259 aa12.41□□□□□ -0.42
SHKBP1-210ENST00000595874 FAM110CQ1W6H9 321 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms