RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PIK3R4Q99570 1358 aa13.77□□□□□ -0.21
LIG1-207ENST00000594759 FKBP4Q02790 459 aaKnown RBP eCLIP13.76□□□□□ -0.21
LIG1-207ENST00000594759 IP6K1Q92551 441 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 ALG1Q9BT22 464 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 MYO1AQ9UBC5 1043 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 FAM184BQ9ULE4 1060 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 A0A087WZG4 1122 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 PFKFB2O60825 505 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 PAK2Q13177 524 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 CCDC38Q502W7 563 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 RRAGBQ5VZM2 374 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 TMED8Q6PL24 325 aaPredicted RBP13.76□□□□□ -0.21
LIG1-207ENST00000594759 RUFY4Q6ZNE9 571 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 RSRC2Q7L4I2 434 aaKnown RBP13.76□□□□□ -0.21
LIG1-207ENST00000594759 UBE3BQ7Z3V4 1068 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 STK38LQ9Y2H1 464 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 NBPF7P0C2Y1 421 aaPredicted RBP13.76□□□□□ -0.21
LIG1-207ENST00000594759 SSH3Q8TE77 659 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 CCDC51Q96ER9 411 aa13.76□□□□□ -0.21
LIG1-207ENST00000594759 TLDC2A0PJX2 215 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 MAP2K7O14733 419 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 GIGYF1O75420 1035 aaPredicted RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 CWF19L2Q2TBE0 894 aaKnown RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 VPS37DQ86XT2 251 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 ACRBPQ8NEB7 543 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 A0A0D9SFI3 127 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 CMA1P23946 247 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 GPTP24298 496 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 GUCY2FP51841 1108 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 SLMAPQ14BN4 828 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 PDCD2Q16342 344 aaPredicted RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 TDRD12Q587J7 1177 aaKnown RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 COPS6Q7L5N1 327 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 TANGO6Q9C0B7 1094 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 HAUS4Q9H6D7 363 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 HIP1RO75146 1068 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 GSCP56915 257 aaPredicted RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 GSPT2Q8IYD1 628 aaKnown RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 UBLCP1Q8WVY7 318 aaPredicted RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 CNNM1Q9NRU3 951 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 RNF17Q9BXT8 1623 aaKnown RBP13.75□□□□□ -0.21
LIG1-207ENST00000594759 IQSEC2Q5JU85 1478 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 SLC30A9Q6PML9 568 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 TMOD3Q9NYL9 352 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 PCDHA5Q9Y5H7 936 aa13.75□□□□□ -0.21
LIG1-207ENST00000594759 ARAP3Q8WWN8 1544 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CPP00450 1065 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 NR1D1P20393 614 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CASP14P31944 242 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 POLE2P56282 527 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 MYSM1Q5VVJ2 828 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 TRIM65Q6PJ69 517 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 WDR66Q8TBY9 1149 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 WASF1Q92558 559 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CCDC43Q96MW1 224 aaKnown RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 NOP53Q9NZM5 478 aaKnown RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 CAND2O75155 1236 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 TSNAXIP1Q2TAA8 658 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CCDC57Q2TAC2 916 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 MCMDC2Q4G0Z9 681 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 RBM43Q6ZSC3 357 aaKnown RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 XAGE3Q8WTP9 111 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 MAP4K1Q92918 833 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 LRRIQ3A6PVS8 624 aaPredicted RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 CLSTN1O94985 981 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 IARSP41252 1262 aaKnown RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 AKAP4Q5JQC9 854 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CACNA2D4Q7Z3S7 1137 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 RNF168Q8IYW5 571 aaPredicted RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 MIPOL1Q8TD10 442 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 EDC3Q96F86 508 aaKnown RBP13.74□□□□□ -0.21
LIG1-207ENST00000594759 BPIFA3Q9BQP9 254 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 RTEL1Q9NZ71 1219 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 CLIC4Q9Y696 253 aa13.74□□□□□ -0.21
LIG1-207ENST00000594759 EPHB4P54760 987 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 APBA1Q02410 837 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 RBL2Q08999 1139 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 ALS2CLQ60I27 953 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 DPF2Q92785 391 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 SGSM3Q96HU1 749 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 SLC40A1Q9NP59 571 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 EPN1Q9Y6I3 576 aaPredicted RBP13.73□□□□□ -0.21
LIG1-207ENST00000594759 GBP1P32455 592 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 MTIF2P46199 727 aaKnown RBP13.73□□□□□ -0.21
LIG1-207ENST00000594759 TRIM14Q14142 442 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 NECTIN1Q15223 517 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 ZNF827Q17R98 1081 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 MICU3Q86XE3 530 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 KRI1Q8N9T8 703 aaKnown RBP13.73□□□□□ -0.21
LIG1-207ENST00000594759 HPCAL4Q9UM19 191 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 SNUPNO95149 360 aaKnown RBP13.73□□□□□ -0.21
LIG1-207ENST00000594759 EPS15P42566 896 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 USP14P54578 494 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 PI4K2BQ8TCG2 481 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 ZKSCAN4Q969J2 545 aaPredicted RBP13.73□□□□□ -0.21
LIG1-207ENST00000594759 ETAA1Q9NY74 926 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 ADGRG1Q9Y653 693 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 MAP3K4Q9Y6R4 1608 aa13.73□□□□□ -0.21
LIG1-207ENST00000594759 HGSO14964 777 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 110.8 ms