RNA–Protein interactions for RNA: ENST00000592790.1

VMP1-216, Transcript of vacuole membrane protein 1, human

Gene VMP1, Length 4,325 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VMP1-216	ENST00000592790	NBPF4	Q96M43	638 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC42	Q96M95	316 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	RNF39	Q9H2S5	420 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	KDM4C	Q9H3R0	1056 aa		3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	NCOA5	Q9HCD5	579 aa	Known RBP	3.98	□□□□□ -1.77
VMP1-216	ENST00000592790	C3	P01024	1663 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA6C	A6NDK9	693 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	POLR2D	O15514	142 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	AKR1B10	O60218	316 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA6D	P0CG33	693 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	LIFR	P42702	1097 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MNAT1	P51948	309 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TNNC1	P63316	161 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	NBPF20	Q3BBV1	942 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC144B	Q3MJ40	725 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CFAP58	Q5T655	872 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RESP18	Q5W5W9	173 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CC2D1A	Q6P1N0	951 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ZNF589	Q86UQ0	364 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC84	Q86UT8	332 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC144CP	Q8IYA2	1237 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	OTUD6B	Q8N6M0	293 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TRIM58	Q8NG06	486 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	OR8K1	Q8NGG5	319 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	HNRNPLL	Q8WVV9	542 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TACO1	Q9BSH4	297 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TAOK3	Q9H2K8	898 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CUEDC2	Q9H467	287 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	VIPAS39	Q9H9C1	493 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA6A	Q9NYA3	693 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RNF14	Q9UBS8	474 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PUF60	Q9UHX1	559 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SAR1B	Q9Y6B6	198 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	AKAP12	Q02952	1782 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	DLG5	Q8TDM6	1919 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GOLGA6B	A6NDN3	693 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TADA3	O75528	432 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC172	P0C7W6	258 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	H2AFX	P16104	143 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC96	Q2M329	555 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	VWA3B	Q502W6	1294 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	IFIT1B	Q5T764	474 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SPTY2D1	Q68D10	685 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CERS3	Q8IU89	383 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	IFT20	Q8IY31	132 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MSL3	Q8N5Y2	521 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	XAGE2	Q96GT9	111 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	NAP1L4	Q99733	375 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TANGO6	Q9C0B7	1094 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	NSRP1	Q9H0G5	558 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TMX4	Q9H1E5	349 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ZSWIM4	Q9H7M6	989 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	FANCL	Q9NW38	375 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SEC63	Q9UGP8	760 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MROH5	Q6ZUA9	1318 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790		A0A087WUV0	522 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RHOXF2B	P0C7M4	288 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SLFN14	P0C7P3	912 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TCP1	P17987	556 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	EEF1G	P26641	437 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	AFM	P43652	599 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	DNM2	P50570	870 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PNOC	Q13519	176 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GALNT17	Q6IS24	598 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MICALL1	Q8N3F8	863 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	FNBP4	Q8N3X1	1017 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RHOXF2	Q9BQY4	288 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SWAP70	Q9UH65	585 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	TRMT112	Q9UI30	125 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	GUCA1B	Q9UMX6	200 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RRP15	Q9Y3B9	282 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CLIC4	Q9Y696	253 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	SLC4A4	Q9Y6R1	1079 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	COL15A1	P39059	1388 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MAST3	O60307	1309 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ERVV-2	B6SEH9	535 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PATL2	C9JE40	543 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	FMNL1	O95466	1100 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	EZR	P15311	586 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	HMGB2	P26583	209 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	INPP5B	P32019	993 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	KRT9	P35527	623 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MAGEA9	P43362	315 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	EXOSC10	Q01780	885 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PTPN12	Q05209	780 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PAK2	Q13177	524 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	MTMR3	Q13615	1198 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PUM3	Q15397	648 aa	Known RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC152	Q4G0S7	254 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CNNM4	Q6P4Q7	775 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CCDC170	Q8IYT3	715 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ANKS4B	Q8N8V4	417 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	NFATC2IP	Q8NCF5	419 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	ENGASE	Q8NFI3	743 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	JAKMIP2	Q96AA8	810 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	LRRC45	Q96CN5	670 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	RNF26	Q9BY78	433 aa	Predicted RBP	3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	PARD6B	Q9BYG5	372 aa		3.97	□□□□□ -1.77
VMP1-216	ENST00000592790	CRNKL1	Q9BZJ0	848 aa	Known RBP	3.97	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms