RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 TLR7Q9NYK1 1049 aaKnown RBP12.71□□□□□ -0.37
LIG3-212ENST00000590181 AFG3L2Q9Y4W6 797 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 ZHX2Q9Y6X8 837 aa12.71□□□□□ -0.37
LIG3-212ENST00000590181 MYO5AQ9Y4I1 1855 aaKnown RBP12.7□□□□□ -0.38
LIG3-212ENST00000590181 A0A0G2JLL6 359 aaPredicted RBP12.7□□□□□ -0.38
LIG3-212ENST00000590181 C19orf81C9J6K1 198 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 BCRP11274 1271 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 CAPN2P17655 700 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 SLC9C2Q5TAH2 1124 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 PRRT2Q7Z6L0 340 aaPredicted RBP12.7□□□□□ -0.38
LIG3-212ENST00000590181 MAGEB6Q8N7X4 407 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 TGFBRAP1Q8WUH2 860 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 HAUS7Q99871 368 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 CRNKL1Q9BZJ0 848 aaKnown RBP12.7□□□□□ -0.38
LIG3-212ENST00000590181 PAG1Q9NWQ8 432 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 ZBTB47Q9UFB7 747 aaPredicted RBP12.7□□□□□ -0.38
LIG3-212ENST00000590181 PNMA3Q9UL41 463 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 CDK5RAP2Q96SN8 1893 aa12.7□□□□□ -0.38
LIG3-212ENST00000590181 FLT1P17948 1338 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 MYH1P12882 1939 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 USP17L5A8MUK1 530 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 DLL1O00548 723 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 ERC2O15083 957 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 INHAP05111 366 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 CYP2C8P10632 490 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 USP5P45974 858 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 RRP1P56182 461 aaKnown RBP12.69□□□□□ -0.38
LIG3-212ENST00000590181 C20orf194Q5TEA3 1177 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 CRACR2BQ8N4Y2 399 aaPredicted RBP12.69□□□□□ -0.38
LIG3-212ENST00000590181 SLC17A8Q8NDX2 589 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 DDRGK1Q96HY6 314 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 WDR18Q9BV38 432 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 ATP8A2Q9NTI2 1148 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 ECHDC1Q9NTX5 307 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 GABRQQ9UN88 632 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 DOCK3Q8IZD9 2030 aa12.69□□□□□ -0.38
LIG3-212ENST00000590181 FRMPD3Q5JV73 1810 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 MAGEB6P1A0A0J9YX57 407 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 A0A1W2PPC1 479 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 SOX1O00570 391 aaPredicted RBP12.68□□□□□ -0.38
LIG3-212ENST00000590181 ZFYP08048 801 aaPredicted RBP12.68□□□□□ -0.38
LIG3-212ENST00000590181 ELNP15502 786 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 UBE3CQ15386 1083 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 AMOTL1Q8IY63 956 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 ZNF280CQ8ND82 737 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 SERPINB13Q9UIV8 391 aa12.68□□□□□ -0.38
LIG3-212ENST00000590181 PLXNB2O15031 1838 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 TTC41PQ6P2S7 1318 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 GOLIM4O00461 696 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 ADCY3O60266 1144 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 EVI5O60447 810 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 PDE6AP16499 860 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 GCLCP48506 637 aaPredicted RBP12.67□□□□□ -0.38
LIG3-212ENST00000590181 SH3D19Q5HYK7 790 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 GPAT2Q6NUI2 795 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 GADL1Q6ZQY3 521 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 ADGRA1Q86SQ6 560 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 RIOK1Q9BRS2 568 aaKnown RBP12.67□□□□□ -0.38
LIG3-212ENST00000590181 UNC80Q8N2C7 3258 aa12.67□□□□□ -0.38
LIG3-212ENST00000590181 MYH7P12883 1935 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 APBB1O00213 710 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 TNPO2O14787 897 aaKnown RBP12.66□□□□□ -0.38
LIG3-212ENST00000590181 SGPL1O95470 568 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 TATDN1Q6P1N9 297 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 MAPKAPK5Q8IW41 473 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 GTF3C2Q8WUA4 911 aaPredicted RBP12.66□□□□□ -0.38
LIG3-212ENST00000590181 LRCH3Q96II8 777 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 DNAJC2Q99543 621 aaKnown RBP12.66□□□□□ -0.38
LIG3-212ENST00000590181 ANTXR1Q9H6X2 564 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 SWAP70Q9UH65 585 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 PALD1Q9ULE6 856 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 AGTPBP1Q9UPW5 1226 aa12.66□□□□□ -0.38
LIG3-212ENST00000590181 ZNF532Q9HCE3 1301 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 FLT3LGP49771 235 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 USP14P54578 494 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 HDAC1Q13547 482 aaPredicted RBP12.65□□□□□ -0.38
LIG3-212ENST00000590181 GIMAP6Q6P9H5 292 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 SMCR8Q8TEV9 937 aaPredicted RBP12.65□□□□□ -0.38
LIG3-212ENST00000590181 DEFB118Q96PH6 123 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 CABP5Q9NP86 173 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 TMOD4Q9NZQ9 345 aa12.65□□□□□ -0.38
LIG3-212ENST00000590181 TCRBV5S4A2TA0A5A2 114 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 USP17L10C9JJH3 530 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 GLRX3O76003 335 aaKnown RBP12.64□□□□□ -0.39
LIG3-212ENST00000590181 TFRCP02786 760 aaKnown RBP12.64□□□□□ -0.39
LIG3-212ENST00000590181 POLR3DP05423 398 aaPredicted RBP12.64□□□□□ -0.39
LIG3-212ENST00000590181 HOXA7P31268 230 aaPredicted RBP12.64□□□□□ -0.39
LIG3-212ENST00000590181 ADD2P35612 726 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 BACE1P56817 501 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 SPP2Q13103 211 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 C7orf61Q8IZ16 206 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 MIGA1Q8NAN2 632 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 BOLA2Q9H3K6 86 aa12.64□□□□□ -0.39
LIG3-212ENST00000590181 PAK6Q9NQU5 681 aaPredicted RBP12.64□□□□□ -0.39
LIG3-212ENST00000590181 SIPA1L1O43166 1804 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 TRIM75PA6NK02 468 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 GNAT2P19087 354 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 DYNLL1P63167 89 aaKnown RBP12.63□□□□□ -0.39
LIG3-212ENST00000590181 IRF5Q13568 498 aa12.63□□□□□ -0.39
LIG3-212ENST00000590181 CERKLQ49MI3 558 aaPredicted RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms