RNA–Protein interactions for RNA: ENST00000588667.5

ATG4D-208, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,619 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-208ENST00000588667 SHMT1P34896 483 aa24.01■■□□□ 1.43
ATG4D-208ENST00000588667 RAD50Q92878 1312 aa24.01■■□□□ 1.43
ATG4D-208ENST00000588667 ROBO3Q96MS0 1386 aa24.01■■□□□ 1.43
ATG4D-208ENST00000588667 GINM1Q9NU53 330 aa24.01■■□□□ 1.43
ATG4D-208ENST00000588667 MANSC4A6NHS7 340 aaPredicted RBP24■■□□□ 1.43
ATG4D-208ENST00000588667 SEC24BO95487 1268 aa24■■□□□ 1.43
ATG4D-208ENST00000588667 PTPRFP10586 1907 aa24■■□□□ 1.43
ATG4D-208ENST00000588667 ASNSP08243 561 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 HSPD1P10809 573 aaKnown RBP23.99■■□□□ 1.43
ATG4D-208ENST00000588667 SREBF2Q12772 1141 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 C16orf86Q6ZW13 317 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 RUFY2Q8WXA3 655 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 DYNLL2Q96FJ2 89 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 ZMYM6O95789 1325 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 MINDY4BA8MYZ0 360 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 SMIM22K7EJ46 135 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 IRF6O14896 467 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 ALX1Q15699 326 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 CERKLQ49MI3 558 aaPredicted RBP23.99■■□□□ 1.43
ATG4D-208ENST00000588667 SLC44A5Q8NCS7 719 aa23.99■■□□□ 1.43
ATG4D-208ENST00000588667 GDF11O95390 407 aa23.98■■□□□ 1.43
ATG4D-208ENST00000588667 ZBTB21Q9ULJ3 1066 aa23.98■■□□□ 1.43
ATG4D-208ENST00000588667 CDK8P49336 464 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 GTF2A2P52657 109 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 INHBEP58166 350 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 TBC1D2Q9BYX2 928 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 WBP1LQ9NX94 342 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.97■■□□□ 1.43
ATG4D-208ENST00000588667 KCNH4Q9UQ05 1017 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 ZHX2Q9Y6X8 837 aa23.97■■□□□ 1.43
ATG4D-208ENST00000588667 ANP32AP39687 249 aaKnown RBP23.96■■□□□ 1.43
ATG4D-208ENST00000588667 TM4SF4P48230 202 aa23.96■■□□□ 1.43
ATG4D-208ENST00000588667 SNAPC2Q13487 334 aa23.96■■□□□ 1.43
ATG4D-208ENST00000588667 MS4A4AQ96JQ5 239 aa23.96■■□□□ 1.43
ATG4D-208ENST00000588667 IL25Q9H293 177 aa23.96■■□□□ 1.43
ATG4D-208ENST00000588667 LAMA4Q16363 1823 aa23.96■■□□□ 1.43
ATG4D-208ENST00000588667 GH2P01242 217 aa23.95■■□□□ 1.43
ATG4D-208ENST00000588667 JAG1P78504 1218 aa23.95■■□□□ 1.43
ATG4D-208ENST00000588667 PPARAQ07869 468 aa23.95■■□□□ 1.43
ATG4D-208ENST00000588667 ABCB5Q2M3G0 1257 aa23.95■■□□□ 1.43
ATG4D-208ENST00000588667 AFG3L2Q9Y4W6 797 aa23.95■■□□□ 1.43
ATG4D-208ENST00000588667 TESPA1A2RU30 521 aaPredicted RBP23.95■■□□□ 1.42
ATG4D-208ENST00000588667 USP17L5A8MUK1 530 aa23.95■■□□□ 1.42
ATG4D-208ENST00000588667 FGAP02671 866 aa23.95■■□□□ 1.42
ATG4D-208ENST00000588667 SHROOM1Q2M3G4 852 aaPredicted RBP23.95■■□□□ 1.42
ATG4D-208ENST00000588667 BEGAINQ9BUH8 593 aa23.95■■□□□ 1.42
ATG4D-208ENST00000588667 DSCC1Q9BVC3 393 aa23.95■■□□□ 1.42
ATG4D-208ENST00000588667 CXCL11O14625 94 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 SLC3A2P08195 630 aaKnown RBP23.94■■□□□ 1.42
ATG4D-208ENST00000588667 CETPP11597 493 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 CCDC84Q86UT8 332 aaPredicted RBP23.94■■□□□ 1.42
ATG4D-208ENST00000588667 CCDC17Q96LX7 622 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 AS3MTQ9HBK9 375 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 ZNF287Q9HBT7 754 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 CABP5Q9NP86 173 aa23.94■■□□□ 1.42
ATG4D-208ENST00000588667 CCL15-CCL14A0A0B4J2E2 113 aa23.93■■□□□ 1.42
ATG4D-208ENST00000588667 SGSM2O43147 1006 aa23.93■■□□□ 1.42
ATG4D-208ENST00000588667 CCL15Q16663 113 aa23.93■■□□□ 1.42
ATG4D-208ENST00000588667 ZNF280CQ8ND82 737 aa23.93■■□□□ 1.42
ATG4D-208ENST00000588667 CA12O43570 354 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 HSPA1AP0DMV8 641 aaKnown RBP23.92■■□□□ 1.42
ATG4D-208ENST00000588667 HSPA1BP0DMV9 641 aaKnown RBP23.92■■□□□ 1.42
ATG4D-208ENST00000588667 BRI3BPQ8WY22 251 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 ANAPC4Q9UJX5 808 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 GREB1LQ9C091 1923 aaPredicted RBP23.92■■□□□ 1.42
ATG4D-208ENST00000588667 IFNL1Q8IU54 200 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 WDR18Q9BV38 432 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 MKNK2Q9HBH9 465 aa23.92■■□□□ 1.42
ATG4D-208ENST00000588667 TRIM75PA6NK02 468 aa23.91■■□□□ 1.42
ATG4D-208ENST00000588667 MPHOSPH10O00566 681 aaKnown RBP23.91■■□□□ 1.42
ATG4D-208ENST00000588667 PDE4BQ07343 736 aa23.91■■□□□ 1.42
ATG4D-208ENST00000588667 TMEM179Q6ZVK1 233 aa23.91■■□□□ 1.42
ATG4D-208ENST00000588667 STK11IPQ8N1F8 1099 aa23.91■■□□□ 1.42
ATG4D-208ENST00000588667 SAGE1Q9NXZ1 904 aa23.91■■□□□ 1.42
ATG4D-208ENST00000588667 LOC285556D6RIA3 1793 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 A0A0G2JLL6 359 aaPredicted RBP23.9■■□□□ 1.42
ATG4D-208ENST00000588667 IGF2BP3O00425 579 aaKnown RBP eCLIP23.9■■□□□ 1.42
ATG4D-208ENST00000588667 AKR1B1P15121 316 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 RASA1P20936 1047 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 SPP2Q13103 211 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 RAB3GAP1Q15042 981 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 PRRT2Q7Z6L0 340 aaPredicted RBP23.9■■□□□ 1.42
ATG4D-208ENST00000588667 TBC1D32Q96NH3 1257 aa23.9■■□□□ 1.42
ATG4D-208ENST00000588667 GUCY1A2P33402 732 aa23.89■■□□□ 1.42
ATG4D-208ENST00000588667 OTUD7BQ6GQQ9 843 aa23.89■■□□□ 1.42
ATG4D-208ENST00000588667 PTPN18Q99952 460 aa23.89■■□□□ 1.42
ATG4D-208ENST00000588667 ESYT1Q9BSJ8 1104 aa23.89■■□□□ 1.42
ATG4D-208ENST00000588667 RNF186Q9NXI6 227 aa23.89■■□□□ 1.42
ATG4D-208ENST00000588667 ALDH1A1P00352 501 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 CTDSPL2Q05D32 466 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 SEPT2Q15019 361 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 C22orf23Q9BZE7 217 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 CTNNA3Q9UI47 895 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 REC8O95072 547 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 MOGSQ13724 837 aa23.88■■□□□ 1.41
ATG4D-208ENST00000588667 FASTKD5Q7L8L6 764 aaKnown RBP23.88■■□□□ 1.41
ATG4D-208ENST00000588667 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.88■■□□□ 1.41
ATG4D-208ENST00000588667 PRDM1O75626 825 aa23.87■■□□□ 1.41
ATG4D-208ENST00000588667 ZNF444Q8N0Y2 327 aaPredicted RBP23.87■■□□□ 1.41
ATG4D-208ENST00000588667 ZCCHC17Q9NP64 241 aaKnown RBP23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms