RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 LDHCP07864 332 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 ASNSP08243 561 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 RGS2P41220 211 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 ERVK-9P63128 1117 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 ERVK-24P63145 666 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 TFCP2Q12800 502 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 MORN1Q5T089 497 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 POTEEQ6S8J3 1075 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 TBC1D9Q6ZT07 1266 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 GPR142Q7Z601 462 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 APBA2Q99767 749 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 DNAJC18Q9H819 358 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 SMC4Q9NTJ3 1288 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 RBPJLQ9UBG7 517 aa13.65□□□□□ -0.22
VPS4B-202ENST00000588059 DNAH12Q6ZR08 3092 aa13.65□□□□□ -0.23
VPS4B-202ENST00000588059 E9PSI1 815 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 SHROOM1Q2M3G4 852 aaPredicted RBP13.64□□□□□ -0.23
VPS4B-202ENST00000588059 Q3C1V9 767 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 SPATA5Q8NB90 893 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 SH3RF3Q8TEJ3 882 aaPredicted RBP13.64□□□□□ -0.23
VPS4B-202ENST00000588059 FAM161BQ96MY7 647 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 MEIS3Q99687 375 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 PI4KBQ9UBF8 816 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 AKAP2Q9Y2D5 859 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 EYSQ5T1H1 3165 aa13.64□□□□□ -0.23
VPS4B-202ENST00000588059 MYO5AQ9Y4I1 1855 aaKnown RBP13.63□□□□□ -0.23
VPS4B-202ENST00000588059 RLFQ13129 1914 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 VCANP13611 3396 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 C19orf81C9J6K1 198 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 PLEKHH3Q7Z736 793 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 PAGR1Q9BTK6 254 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 RAI14Q9P0K7 980 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 HDAC5Q9UQL6 1122 aa13.63□□□□□ -0.23
VPS4B-202ENST00000588059 USP17L10C9JJH3 530 aa13.62□□□□□ -0.23
VPS4B-202ENST00000588059 ARID4AP29374 1257 aaPredicted RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 METTL16Q86W50 562 aaKnown RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 CCAR1Q8IX12 1150 aaKnown RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 GTF3C2Q8WUA4 911 aaPredicted RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 NEUROD6Q96NK8 337 aa13.62□□□□□ -0.23
VPS4B-202ENST00000588059 LBHD1Q9BQE6 289 aaPredicted RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 DHX36Q9H2U1 1008 aaKnown RBP13.62□□□□□ -0.23
VPS4B-202ENST00000588059 ZBTB21Q9ULJ3 1066 aa13.62□□□□□ -0.23
VPS4B-202ENST00000588059 SRGAP3O43295 1099 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 GDF11O95390 407 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 MCAMP43121 646 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 SLFN5Q08AF3 891 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 MAP2K5Q13163 448 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 ZNF697Q5TEC3 545 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 SENP6Q9GZR1 1112 aaPredicted RBP13.61□□□□□ -0.23
VPS4B-202ENST00000588059 EMILIN3Q9NT22 766 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 FLRT1Q9NZU1 646 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 FLT1P17948 1338 aa13.61□□□□□ -0.23
VPS4B-202ENST00000588059 MYH1P12882 1939 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 CNMDO75829 334 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 ATN1P54259 1190 aaPredicted RBP13.6□□□□□ -0.23
VPS4B-202ENST00000588059 MTX1Q13505 466 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 GORABQ5T7V8 394 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 MAPKAPK5Q8IW41 473 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 TGFBRAP1Q8WUH2 860 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 NOL10Q9BSC4 688 aaKnown RBP13.6□□□□□ -0.23
VPS4B-202ENST00000588059 GINM1Q9NU53 330 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 AATFQ9NY61 560 aaKnown RBP eCLIP13.6□□□□□ -0.23
VPS4B-202ENST00000588059 LRP2BPQ9P2M1 347 aa13.6□□□□□ -0.23
VPS4B-202ENST00000588059 DDX20Q9UHI6 824 aaKnown RBP13.6□□□□□ -0.23
VPS4B-202ENST00000588059 NOB1Q9ULX3 412 aaKnown RBP13.6□□□□□ -0.23
VPS4B-202ENST00000588059 SPTBN5Q9NRC6 3674 aaKnown RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 PRUNE2Q8WUY3 3088 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 MFSD14CQ5VZR4 134 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 USP17L2Q6R6M4 530 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 ADGRA1Q86SQ6 560 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 FOXP4Q8IVH2 680 aaPredicted RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 CRACR2BQ8N4Y2 399 aaPredicted RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 LPAR1Q92633 364 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 EDC3Q96F86 508 aaKnown RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 CDX2Q99626 313 aaPredicted RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 API5Q9BZZ5 524 aaKnown RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 CWC22Q9HCG8 908 aaKnown RBP13.59□□□□□ -0.23
VPS4B-202ENST00000588059 PALD1Q9ULE6 856 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 RABGAP1Q9Y3P9 1069 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 NDUFB9Q9Y6M9 179 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 ZNF236Q9UL36 1845 aa13.59□□□□□ -0.23
VPS4B-202ENST00000588059 DNM1LO00429 736 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 MSCO60682 206 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 BAG3O95817 575 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 UQCRFS1P1P0C7P4 283 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 PLCG2P16885 1265 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 RTP1P59025 263 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 PPP4CP60510 307 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 NAA16Q6N069 864 aaPredicted RBP13.58□□□□□ -0.24
VPS4B-202ENST00000588059 C12orf42Q96LP6 360 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 TRIM34Q9BYJ4 488 aa13.58□□□□□ -0.24
VPS4B-202ENST00000588059 SLC15A5A6NIM6 579 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 GLRX3O76003 335 aaKnown RBP13.57□□□□□ -0.24
VPS4B-202ENST00000588059 HOXC6P09630 235 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 PTPREP23469 700 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 CCNA1P78396 465 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 GRB14Q14449 540 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 SHHQ15465 462 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 C9orf50Q5SZB4 431 aa13.57□□□□□ -0.24
VPS4B-202ENST00000588059 TRPV1Q8NER1 839 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms