RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.53□□□□□ -0.08
LIG3-209ENST00000586435 TMOD4Q9NZQ9 345 aa14.53□□□□□ -0.08
LIG3-209ENST00000586435 DBNLQ9UJU6 430 aaKnown RBP14.53□□□□□ -0.08
LIG3-209ENST00000586435 TAOK2Q9UL54 1235 aa14.53□□□□□ -0.08
LIG3-209ENST00000586435 RANBP2P49792 3224 aaKnown RBP14.53□□□□□ -0.08
LIG3-209ENST00000586435 A0A1W2PPC1 479 aa14.52□□□□□ -0.09
LIG3-209ENST00000586435 TFRCP02786 760 aaKnown RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 ZAP70P43403 619 aa14.52□□□□□ -0.09
LIG3-209ENST00000586435 IRX3P78415 501 aaPredicted RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 TMED8Q6PL24 325 aaPredicted RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 FTSJ3Q8IY81 847 aaKnown RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 CRACR2BQ8N4Y2 399 aaPredicted RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 PIH1D3Q9NQM4 214 aaKnown RBP14.52□□□□□ -0.09
LIG3-209ENST00000586435 ZBTB21Q9ULJ3 1066 aa14.52□□□□□ -0.09
LIG3-209ENST00000586435 RPTORQ8N122 1335 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 USP17L10C9JJH3 530 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 HLA-DOAP06340 250 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 JAG1P78504 1218 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 GTF3C2Q8WUA4 911 aaPredicted RBP14.51□□□□□ -0.09
LIG3-209ENST00000586435 SOCS4Q8WXH5 440 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 TRIM34Q9BYJ4 488 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 C1orf115Q9H7X2 142 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 PALD1Q9ULE6 856 aa14.51□□□□□ -0.09
LIG3-209ENST00000586435 NAV1Q8NEY1 1877 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 EVI5O60447 810 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 HERVK_113P62684 666 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 NECAB2Q7Z6G3 386 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 EAF2Q96CJ1 260 aaPredicted RBP14.5□□□□□ -0.09
LIG3-209ENST00000586435 EHD4Q9H223 541 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 HMX1Q9NP08 348 aaPredicted RBP14.5□□□□□ -0.09
LIG3-209ENST00000586435 TLR7Q9NYK1 1049 aaKnown RBP14.5□□□□□ -0.09
LIG3-209ENST00000586435 SZT2Q5T011 3432 aa14.5□□□□□ -0.09
LIG3-209ENST00000586435 GDF11O95390 407 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 RLBP1P12271 317 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 XRCC5P13010 732 aaKnown RBP14.49□□□□□ -0.09
LIG3-209ENST00000586435 CYP7A1P22680 504 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 DYNLL1P63167 89 aaKnown RBP14.49□□□□□ -0.09
LIG3-209ENST00000586435 MAP3K21Q5TCX8 1036 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 TATDN1Q6P1N9 297 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 ITPRIPQ8IWB1 547 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 GPRC5AQ8NFJ5 357 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 TRIB2Q92519 343 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 PAWRQ96IZ0 340 aaKnown RBP14.49□□□□□ -0.09
LIG3-209ENST00000586435 C12orf42Q96LP6 360 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 P2RX7Q99572 595 aaKnown RBP14.49□□□□□ -0.09
LIG3-209ENST00000586435 NUDT12Q9BQG2 462 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 TXNRD2Q9NNW7 524 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 FRMPD3Q5JV73 1810 aa14.49□□□□□ -0.09
LIG3-209ENST00000586435 IDH1O75874 414 aaKnown RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 MAPK4P31152 587 aa14.48□□□□□ -0.09
LIG3-209ENST00000586435 SHROOM1Q2M3G4 852 aaPredicted RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 CEP85Q6P2H3 762 aa14.48□□□□□ -0.09
LIG3-209ENST00000586435 USP17L2Q6R6M4 530 aa14.48□□□□□ -0.09
LIG3-209ENST00000586435 TRMT44Q8IYL2 757 aaKnown RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 DIS3LQ8TF46 1054 aaKnown RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 CCDC8Q9H0W5 538 aaPredicted RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 RBPJLQ9UBG7 517 aa14.48□□□□□ -0.09
LIG3-209ENST00000586435 SAP30BPQ9UHR5 308 aaKnown RBP14.48□□□□□ -0.09
LIG3-209ENST00000586435 ERVK-9P63128 1117 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 ERVK-24P63145 666 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 TRIM32Q13049 653 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 ERC1Q8IUD2 1116 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 USP6NLQ92738 828 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 EMILIN3Q9NT22 766 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 SERPINB13Q9UIV8 391 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 OGDHLQ9ULD0 1010 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 MYH8P13535 1937 aa14.47□□□□□ -0.09
LIG3-209ENST00000586435 GH2P01242 217 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 CYP2B6P20813 491 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 USP5P45974 858 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 MNX1P50219 401 aaPredicted RBP14.46□□□□□ -0.09
LIG3-209ENST00000586435 HNRNPUQ00839 825 aaKnown RBP eCLIP14.46□□□□□ -0.09
LIG3-209ENST00000586435 MAP3K12Q12852 859 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 PDE3AQ14432 1141 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 TTC6Q86TZ1 520 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 MAGEB6Q8N7X4 407 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 NBPF3Q9H094 633 aa14.46□□□□□ -0.09
LIG3-209ENST00000586435 PRKAR2AP13861 404 aaKnown RBP14.45□□□□□ -0.1
LIG3-209ENST00000586435 USP14P54578 494 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 Q3C1V9 767 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 MORN1Q5T089 497 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 POTEEQ6S8J3 1075 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 LBX2Q6XYB7 198 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 GPR142Q7Z601 462 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 MIGA1Q8NAN2 632 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 APBA2Q99767 749 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 RIOK1Q9BRS2 568 aaKnown RBP14.45□□□□□ -0.1
LIG3-209ENST00000586435 KIAA1683Q9H0B3 1180 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 PORCNQ9H237 461 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 ANTXR1Q9H6X2 564 aa14.45□□□□□ -0.1
LIG3-209ENST00000586435 ZNF236Q9UL36 1845 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L15C9J2P7 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L13C9JLJ4 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L11C9JVI0 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L18D6R9N7 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L22D6RA61 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L17D6RBQ6 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L19D6RCP7 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 USP17L20D6RJB6 530 aa14.44□□□□□ -0.1
LIG3-209ENST00000586435 PEX10O60683 326 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms