RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 AGTPBP1Q9UPW5 1226 aa33.95■■■■□ 3.03
LIG3-208ENST00000586407 GH2P01242 217 aa33.94■■■■□ 3.02
LIG3-208ENST00000586407 MTMR2Q13614 643 aa33.94■■■■□ 3.02
LIG3-208ENST00000586407 AS3MTQ9HBK9 375 aa33.94■■■■□ 3.02
LIG3-208ENST00000586407 KIF22Q14807 665 aa33.93■■■■□ 3.02
LIG3-208ENST00000586407 UBE3CQ15386 1083 aa33.93■■■■□ 3.02
LIG3-208ENST00000586407 PTCH2Q9Y6C5 1203 aa33.93■■■■□ 3.02
LIG3-208ENST00000586407 BCRP11274 1271 aa33.92■■■■□ 3.02
LIG3-208ENST00000586407 TATDN1Q6P1N9 297 aa33.92■■■■□ 3.02
LIG3-208ENST00000586407 WDR18Q9BV38 432 aa33.92■■■■□ 3.02
LIG3-208ENST00000586407 PUS7LQ9H0K6 701 aaKnown RBP33.92■■■■□ 3.02
LIG3-208ENST00000586407 MYH8P13535 1937 aa33.92■■■■□ 3.02
LIG3-208ENST00000586407 SHMT1P34896 483 aa33.91■■■■□ 3.02
LIG3-208ENST00000586407 RGS19P49795 217 aa33.91■■■■□ 3.02
LIG3-208ENST00000586407 PROCA1Q8NCQ7 364 aaPredicted RBP33.91■■■■□ 3.02
LIG3-208ENST00000586407 TRIM47Q96LD4 638 aa33.91■■■■□ 3.02
LIG3-208ENST00000586407 TBC1D2Q9BYX2 928 aa33.91■■■■□ 3.02
LIG3-208ENST00000586407 SLC45A1Q9Y2W3 748 aa33.91■■■■□ 3.02
LIG3-208ENST00000586407 SMIM22K7EJ46 135 aa33.9■■■■□ 3.02
LIG3-208ENST00000586407 PSMC4P43686 418 aa33.9■■■■□ 3.02
LIG3-208ENST00000586407 KBTBD3Q8NAB2 608 aa33.9■■■■□ 3.02
LIG3-208ENST00000586407 CYP2D7A0A087X1C5 515 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 ARHGEF6Q15052 776 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 SH3D19Q5HYK7 790 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 ANKRD45Q5TZF3 282 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 ZSCAN25Q6NSZ9 544 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 SLC44A5Q8NCS7 719 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 EXOC6Q8TAG9 804 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 PI4K2BQ8TCG2 481 aa33.89■■■■□ 3.02
LIG3-208ENST00000586407 SMCR8Q8TEV9 937 aaPredicted RBP33.89■■■■□ 3.02
LIG3-208ENST00000586407 BACE1P56817 501 aa33.88■■■■□ 3.01
LIG3-208ENST00000586407 GABPAQ06546 454 aa33.88■■■■□ 3.01
LIG3-208ENST00000586407 CERKLQ49MI3 558 aaPredicted RBP33.88■■■■□ 3.01
LIG3-208ENST00000586407 DYNLL2Q96FJ2 89 aa33.88■■■■□ 3.01
LIG3-208ENST00000586407 HDAC1Q13547 482 aaPredicted RBP33.87■■■■□ 3.01
LIG3-208ENST00000586407 GINM1Q9NU53 330 aa33.87■■■■□ 3.01
LIG3-208ENST00000586407 TTC41PQ6P2S7 1318 aa33.86■■■■□ 3.01
LIG3-208ENST00000586407 FMNL1O95466 1100 aaPredicted RBP33.86■■■■□ 3.01
LIG3-208ENST00000586407 MLLT1Q03111 559 aaPredicted RBP33.86■■■■□ 3.01
LIG3-208ENST00000586407 RAB3GAP1Q15042 981 aa33.86■■■■□ 3.01
LIG3-208ENST00000586407 ABCB5Q2M3G0 1257 aa33.86■■■■□ 3.01
LIG3-208ENST00000586407 SLC4A4Q9Y6R1 1079 aa33.86■■■■□ 3.01
LIG3-208ENST00000586407 HTTP42858 3142 aa33.86■■■■□ 3.01
LIG3-208ENST00000586407 MX1P20591 662 aa33.85■■■■□ 3.01
LIG3-208ENST00000586407 ZYXQ15942 572 aaKnown RBP33.85■■■■□ 3.01
LIG3-208ENST00000586407 TMOD4Q9NZQ9 345 aa33.85■■■■□ 3.01
LIG3-208ENST00000586407 USP17L10C9JJH3 530 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 OSBPP22059 807 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 ANKRD13CQ8N6S4 541 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 OSBP2Q969R2 916 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 ASCC2Q9H1I8 757 aaPredicted RBP33.84■■■■□ 3.01
LIG3-208ENST00000586407 ATP8A2Q9NTI2 1148 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 PNMA3Q9UL41 463 aa33.84■■■■□ 3.01
LIG3-208ENST00000586407 SUPT16HQ9Y5B9 1047 aaKnown RBP33.84■■■■□ 3.01
LIG3-208ENST00000586407 SALL3Q9BXA9 1300 aa33.83■■■■□ 3.01
LIG3-208ENST00000586407 DOCK3Q8IZD9 2030 aa33.83■■■■□ 3.01
LIG3-208ENST00000586407 RNF113AO15541 343 aaKnown RBP33.82■■■■□ 3
LIG3-208ENST00000586407 GUCY1A2P33402 732 aa33.82■■■■□ 3
LIG3-208ENST00000586407 ACER1Q8TDN7 264 aa33.82■■■■□ 3
LIG3-208ENST00000586407 ARMC5Q96C12 935 aa33.82■■■■□ 3
LIG3-208ENST00000586407 EMILIN3Q9NT22 766 aa33.82■■■■□ 3
LIG3-208ENST00000586407 SRRDQ9UH36 339 aa33.82■■■■□ 3
LIG3-208ENST00000586407 USP17L12C9JPN9 530 aa33.81■■■■□ 3
LIG3-208ENST00000586407 USP17L21D6R901 530 aa33.81■■■■□ 3
LIG3-208ENST00000586407 MPHOSPH10O00566 681 aaKnown RBP33.81■■■■□ 3
LIG3-208ENST00000586407 ERC2O15083 957 aa33.81■■■■□ 3
LIG3-208ENST00000586407 GLRX3O76003 335 aaKnown RBP33.81■■■■□ 3
LIG3-208ENST00000586407 MYCP01106 439 aaPredicted RBP33.81■■■■□ 3
LIG3-208ENST00000586407 SLC9C1Q4G0N8 1177 aa33.81■■■■□ 3
LIG3-208ENST00000586407 SH3TC2Q8TF17 1288 aa33.81■■■■□ 3
LIG3-208ENST00000586407 APPBP2Q92624 585 aa33.81■■■■□ 3
LIG3-208ENST00000586407 GCC1Q96CN9 775 aa33.81■■■■□ 3
LIG3-208ENST00000586407 STRBPQ96SI9 672 aaKnown RBP33.81■■■■□ 3
LIG3-208ENST00000586407 FEZ1Q99689 392 aa33.81■■■■□ 3
LIG3-208ENST00000586407 ZBTB47Q9UFB7 747 aaPredicted RBP33.81■■■■□ 3
LIG3-208ENST00000586407 KIAA0100Q14667 2235 aaKnown RBP33.81■■■■□ 3
LIG3-208ENST00000586407 C19orf81C9J6K1 198 aa33.8■■■■□ 3
LIG3-208ENST00000586407 M0R2C6 588 aa33.8■■■■□ 3
LIG3-208ENST00000586407 PEX10O60683 326 aa33.8■■■■□ 3
LIG3-208ENST00000586407 PABPC4Q13310 644 aaKnown RBP eCLIP33.8■■■■□ 3
LIG3-208ENST00000586407 SEPT2Q15019 361 aa33.8■■■■□ 3
LIG3-208ENST00000586407 CABP5Q9NP86 173 aa33.8■■■■□ 3
LIG3-208ENST00000586407 FCGRTP55899 365 aa33.79■■■■□ 3
LIG3-208ENST00000586407 C12orf60Q5U649 245 aa33.79■■■■□ 3
LIG3-208ENST00000586407 MYPNQ86TC9 1320 aa33.79■■■■□ 3
LIG3-208ENST00000586407 RBBP6Q7Z6E9 1792 aaKnown RBP33.78■■■■□ 3
LIG3-208ENST00000586407 POTEFA5A3E0 1075 aa33.78■■■■□ 3
LIG3-208ENST00000586407 GNRH1P01148 92 aa33.78■■■■□ 3
LIG3-208ENST00000586407 IRX3P78415 501 aaPredicted RBP33.78■■■■□ 3
LIG3-208ENST00000586407 PRKCZQ05513 592 aa33.78■■■■□ 3
LIG3-208ENST00000586407 USP17L2Q6R6M4 530 aa33.78■■■■□ 3
LIG3-208ENST00000586407 CLEC10AQ8IUN9 316 aa33.78■■■■□ 3
LIG3-208ENST00000586407 FSD1Q9BTV5 496 aa33.78■■■■□ 3
LIG3-208ENST00000586407 GABRQQ9UN88 632 aa33.78■■■■□ 3
LIG3-208ENST00000586407 CTR9Q6PD62 1173 aa33.77■■■■□ 3
LIG3-208ENST00000586407 ZNF333Q96JL9 665 aa33.77■■■■□ 3
LIG3-208ENST00000586407 SEC62Q99442 399 aaKnown RBP33.77■■■■□ 3
LIG3-208ENST00000586407 P2RX7Q99572 595 aaKnown RBP33.77■■■■□ 3
LIG3-208ENST00000586407 GPAA1O43292 621 aa33.76■■■□□ 2.99
LIG3-208ENST00000586407 IGHDP01880 384 aa33.76■■■□□ 2.99
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms