RNA–Protein interactions for RNA: ENST00000582792.5

SS18-222, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 531 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-222ENST00000582792 ZBED9Q6R2W3 1325 aa16.66■□□□□ 0.26
SS18-222ENST00000582792 FOCADQ5VW36 1801 aa16.66■□□□□ 0.26
SS18-222ENST00000582792 CDK5RAP2Q96SN8 1893 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 C19orf81C9J6K1 198 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 XRCC5P13010 732 aaKnown RBP16.65■□□□□ 0.26
SS18-222ENST00000582792 CYP2B6P20813 491 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 HERVK_113P62684 666 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 FOXP4Q8IVH2 680 aaPredicted RBP16.65■□□□□ 0.26
SS18-222ENST00000582792 GPRC5AQ8NFJ5 357 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 TGFBRAP1Q8WUH2 860 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 SOCS4Q8WXH5 440 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 NUDT12Q9BQG2 462 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 DNAJC18Q9H819 358 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 TXNRD2Q9NNW7 524 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 GINM1Q9NU53 330 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 FLT1P17948 1338 aa16.65■□□□□ 0.26
SS18-222ENST00000582792 USP17L10C9JJH3 530 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 IPO8O15397 1037 aaKnown RBP16.64■□□□□ 0.25
SS18-222ENST00000582792 PRKAR2AP13861 404 aaKnown RBP16.64■□□□□ 0.25
SS18-222ENST00000582792 TRIM27P14373 513 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 TTC39AQ5SRH9 613 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 MAPKAPK5Q8IW41 473 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 CRACR2BQ8N4Y2 399 aaPredicted RBP16.64■□□□□ 0.25
SS18-222ENST00000582792 GPR108Q9NPR9 543 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 SNRKQ9NRH2 765 aa16.64■□□□□ 0.25
SS18-222ENST00000582792 LAMA2P24043 3122 aaKnown RBP16.63■□□□□ 0.25
SS18-222ENST00000582792 PEX10O60683 326 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 IGSF3O75054 1194 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 GDF11O95390 407 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 MAPK4P31152 587 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 SHROOM1Q2M3G4 852 aaPredicted RBP16.63■□□□□ 0.25
SS18-222ENST00000582792 GPR153Q6NV75 609 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 ATF7IPQ6VMQ6 1270 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 ADGRA1Q86SQ6 560 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 TRMT44Q8IYL2 757 aaKnown RBP16.63■□□□□ 0.25
SS18-222ENST00000582792 TRIM34Q9BYJ4 488 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 RBPJLQ9UBG7 517 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 ZBTB21Q9ULJ3 1066 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 TNNQ9UQP3 1299 aa16.63■□□□□ 0.25
SS18-222ENST00000582792 CYP2E1P05181 493 aaPredicted RBP16.62■□□□□ 0.25
SS18-222ENST00000582792 SYN1P17600 705 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 ERVK-9P63128 1117 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 ERVK-24P63145 666 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 PDE3AQ14432 1141 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 TNNI3KQ59H18 835 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 CCDC158Q5M9N0 1113 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 GTF3C2Q8WUA4 911 aaPredicted RBP16.62■□□□□ 0.25
SS18-222ENST00000582792 USP6NLQ92738 828 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 DBNDD2Q9BQY9 259 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 PALD1Q9ULE6 856 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 FPGT-TNNI3KV9GXZ4 949 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 PFASO15067 1338 aa16.62■□□□□ 0.25
SS18-222ENST00000582792 MYO5AQ9Y4I1 1855 aaKnown RBP16.61■□□□□ 0.25
SS18-222ENST00000582792 DLL1O00548 723 aa16.61■□□□□ 0.25
SS18-222ENST00000582792 ZKSCAN1P17029 563 aaPredicted RBP16.61■□□□□ 0.25
SS18-222ENST00000582792 MAGEA10P43363 369 aaPredicted RBP16.61■□□□□ 0.25
SS18-222ENST00000582792 CACNB2Q08289 660 aaPredicted RBP16.61■□□□□ 0.25
SS18-222ENST00000582792 POLA2Q14181 598 aa16.61■□□□□ 0.25
SS18-222ENST00000582792 Q3C1V9 767 aa16.61■□□□□ 0.25
SS18-222ENST00000582792 LRIT3Q3SXY7 679 aa16.61■□□□□ 0.25
SS18-222ENST00000582792 ZNF512BQ96KM6 892 aaPredicted RBP16.61■□□□□ 0.25
SS18-222ENST00000582792 PORCNQ9H237 461 aa16.61■□□□□ 0.25
SS18-222ENST00000582792 HLA-DOAP06340 250 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 COL6A1P12109 1028 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 MORN1Q5T089 497 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 USP17L2Q6R6M4 530 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 POTEEQ6S8J3 1075 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 GPR142Q7Z601 462 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 CCAR1Q8IX12 1150 aaKnown RBP16.6■□□□□ 0.25
SS18-222ENST00000582792 TDHQ8IZJ6 230 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 FRAT1Q92837 279 aaPredicted RBP16.6■□□□□ 0.25
SS18-222ENST00000582792 CLUAP1Q96AJ1 413 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 EMILIN3Q9NT22 766 aa16.6■□□□□ 0.25
SS18-222ENST00000582792 SAP30BPQ9UHR5 308 aaKnown RBP16.6■□□□□ 0.25
SS18-222ENST00000582792 BCAR3O75815 825 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 RGS2P41220 211 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 ZAP70P43403 619 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 CCL14Q16627 93 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 LHX8Q68G74 356 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 PLEKHH3Q7Z736 793 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 DEFB123Q8N688 67 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 APBA2Q99767 749 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 PAGR1Q9BTK6 254 aa16.59■□□□□ 0.25
SS18-222ENST00000582792 PIH1D3Q9NQM4 214 aaKnown RBP16.59■□□□□ 0.25
SS18-222ENST00000582792 CUL9Q8IWT3 2517 aa16.58■□□□□ 0.25
SS18-222ENST00000582792 GH2P01242 217 aa16.58■□□□□ 0.24
SS18-222ENST00000582792 CCND3P30281 292 aaPredicted RBP16.58■□□□□ 0.24
SS18-222ENST00000582792 DYNLL1P63167 89 aaKnown RBP16.58■□□□□ 0.24
SS18-222ENST00000582792 OS9Q13438 667 aaPredicted RBP16.58■□□□□ 0.24
SS18-222ENST00000582792 SSH3Q8TE77 659 aa16.58■□□□□ 0.24
SS18-222ENST00000582792 C12orf42Q96LP6 360 aa16.58■□□□□ 0.24
SS18-222ENST00000582792 UBE2OQ9C0C9 1292 aaKnown RBP16.58■□□□□ 0.24
SS18-222ENST00000582792 RABGAP1Q9Y3P9 1069 aa16.58■□□□□ 0.24
SS18-222ENST00000582792 UNC80Q8N2C7 3258 aa16.57■□□□□ 0.24
SS18-222ENST00000582792 MYH1P12882 1939 aa16.57■□□□□ 0.24
SS18-222ENST00000582792 CYP7A1P22680 504 aa16.57■□□□□ 0.24
SS18-222ENST00000582792 TATDN1Q6P1N9 297 aa16.57■□□□□ 0.24
SS18-222ENST00000582792 TMEM57Q8N5G2 664 aa16.57■□□□□ 0.24
SS18-222ENST00000582792 USP17L15C9J2P7 530 aa16.56■□□□□ 0.24
SS18-222ENST00000582792 USP17L13C9JLJ4 530 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms