RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 TXNRD2Q9NNW7 524 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 RBPJLQ9UBG7 517 aa12.23□□□□□ -0.45
RFFL-208ENST00000581039 CT47B1P0C2W7 299 aaPredicted RBP12.22□□□□□ -0.45
RFFL-208ENST00000581039 UQCRFS1P1P0C7P4 283 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 COL6A1P12109 1028 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 PLCG2P16885 1265 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 RGS2P41220 211 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 MDM2Q00987 491 aaPredicted RBP12.22□□□□□ -0.45
RFFL-208ENST00000581039 Q3C1V9 767 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 PLEKHH3Q7Z736 793 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 GTF3C2Q8WUA4 911 aaPredicted RBP12.22□□□□□ -0.45
RFFL-208ENST00000581039 CDCA7LQ96GN5 454 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 CWC22Q9HCG8 908 aaKnown RBP12.22□□□□□ -0.45
RFFL-208ENST00000581039 GINM1Q9NU53 330 aa12.22□□□□□ -0.45
RFFL-208ENST00000581039 AATFQ9NY61 560 aaKnown RBP eCLIP12.22□□□□□ -0.45
RFFL-208ENST00000581039 ALPK3Q96L96 1907 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 ARID4AP29374 1257 aaPredicted RBP12.21□□□□□ -0.45
RFFL-208ENST00000581039 CCND3P30281 292 aaPredicted RBP12.21□□□□□ -0.45
RFFL-208ENST00000581039 ERVK-9P63128 1117 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 ERVK-24P63145 666 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 G3BP1Q13283 466 aaKnown RBP eCLIP12.21□□□□□ -0.45
RFFL-208ENST00000581039 LRRC26Q2I0M4 334 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 LHX8Q68G74 356 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 NAA16Q6N069 864 aaPredicted RBP12.21□□□□□ -0.45
RFFL-208ENST00000581039 GPR142Q7Z601 462 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 MAPKAPK5Q8IW41 473 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 TGFBRAP1Q8WUH2 860 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 USP6NLQ92738 828 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 PAGR1Q9BTK6 254 aa12.21□□□□□ -0.45
RFFL-208ENST00000581039 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.21□□□□□ -0.45
RFFL-208ENST00000581039 ZNF316A6NFI3 1004 aaPredicted RBP12.2□□□□□ -0.46
RFFL-208ENST00000581039 GLRX3O76003 335 aaKnown RBP12.2□□□□□ -0.46
RFFL-208ENST00000581039 GDF11O95390 407 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 MCAMP43121 646 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 PPP4CP60510 307 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 JAG1P78504 1218 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 MTX1Q13505 466 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 CCL14Q16627 93 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 MORN1Q5T089 497 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 USP17L2Q6R6M4 530 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 EDC3Q96F86 508 aaKnown RBP12.2□□□□□ -0.46
RFFL-208ENST00000581039 APBA2Q99767 749 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 LBHD1Q9BQE6 289 aaPredicted RBP12.2□□□□□ -0.46
RFFL-208ENST00000581039 PORCNQ9H237 461 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 PALD1Q9ULE6 856 aa12.2□□□□□ -0.46
RFFL-208ENST00000581039 DDX60LQ5H9U9 1706 aaKnown RBP12.2□□□□□ -0.46
RFFL-208ENST00000581039 CCNA1P78396 465 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 MFSD14CQ5VZR4 134 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 FAM109BQ6ICB4 259 aaPredicted RBP12.19□□□□□ -0.46
RFFL-208ENST00000581039 ATF7IPQ6VMQ6 1270 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 METTL16Q86W50 562 aaKnown RBP12.19□□□□□ -0.46
RFFL-208ENST00000581039 TRMT2AQ8IZ69 625 aaKnown RBP12.19□□□□□ -0.46
RFFL-208ENST00000581039 ARHGAP45Q92619 1136 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 SENP6Q9GZR1 1112 aaPredicted RBP12.19□□□□□ -0.46
RFFL-208ENST00000581039 SNRKQ9NRH2 765 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 EMILIN3Q9NT22 766 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 ZBTB21Q9ULJ3 1066 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 LOC285556D6RIA3 1793 aa12.19□□□□□ -0.46
RFFL-208ENST00000581039 FLT1P17948 1338 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 POTEB2H3BUK9 544 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 HLA-DOAP06340 250 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 MAP2K5Q13163 448 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 CCDC158Q5M9N0 1113 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 TTC39AQ5SRH9 613 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 WDR78Q5VTH9 848 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.18□□□□□ -0.46
RFFL-208ENST00000581039 DNAJC18Q9H819 358 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 PRKAG2Q9UGJ0 569 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 SAP30BPQ9UHR5 308 aaKnown RBP12.18□□□□□ -0.46
RFFL-208ENST00000581039 RABGAP1Q9Y3P9 1069 aa12.18□□□□□ -0.46
RFFL-208ENST00000581039 USP17L15C9J2P7 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L13C9JLJ4 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L11C9JVI0 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L18D6R9N7 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L22D6RA61 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L17D6RBQ6 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L19D6RCP7 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L20D6RJB6 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 GNAI2P04899 355 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 CNGA1P29973 690 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 ATP2B2Q01814 1243 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 USP17L24Q0WX57 530 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 SHROOM1Q2M3G4 852 aaPredicted RBP12.17□□□□□ -0.46
RFFL-208ENST00000581039 POTEEQ6S8J3 1075 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 FEZ1Q99689 392 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 COL25A1Q9BXS0 654 aaPredicted RBP12.17□□□□□ -0.46
RFFL-208ENST00000581039 NDUFB9Q9Y6M9 179 aa12.17□□□□□ -0.46
RFFL-208ENST00000581039 PLXNB2O15031 1838 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 SLC15A5A6NIM6 579 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 MSCO60682 206 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 IGSF3O75054 1194 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 GH2P01242 217 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 PTPREP23469 700 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 RARSP54136 660 aaKnown RBP12.16□□□□□ -0.46
RFFL-208ENST00000581039 ATN1P54259 1190 aaPredicted RBP12.16□□□□□ -0.46
RFFL-208ENST00000581039 USP14P54578 494 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 ZYXQ15942 572 aaKnown RBP12.16□□□□□ -0.46
RFFL-208ENST00000581039 ADGRA1Q86SQ6 560 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 LPAR1Q92633 364 aa12.16□□□□□ -0.46
RFFL-208ENST00000581039 FAM161BQ96MY7 647 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms