RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 ZBTB48P10074 688 aaPredicted RBP18.41■□□□□ 0.54
SS18-216ENST00000580751 NOGQ13253 232 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 IMMTQ16891 758 aaKnown RBP18.41■□□□□ 0.54
SS18-216ENST00000580751 WNK4Q96J92 1243 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 CCDC17Q96LX7 622 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 MKNK2Q9HBH9 465 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.41■□□□□ 0.54
SS18-216ENST00000580751 ZBTB21Q9ULJ3 1066 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 ATAD5Q96QE3 1844 aa18.41■□□□□ 0.54
SS18-216ENST00000580751 SMIM22K7EJ46 135 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 ZNF213O14771 459 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 GDF11O95390 407 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 PCP11498 1178 aaKnown RBP18.4■□□□□ 0.54
SS18-216ENST00000580751 PTH1RQ03431 593 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 PPATQ06203 517 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 GRM1Q13255 1194 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 RRP1BQ14684 758 aaKnown RBP18.4■□□□□ 0.54
SS18-216ENST00000580751 ABCB5Q2M3G0 1257 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 SPRYD7Q5W111 196 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 IL27Q8NEV9 243 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 MAP4K1Q92918 833 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 OPTNQ96CV9 577 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 OTUD5Q96G74 571 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 TBC1D2Q9BYX2 928 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 LSG1Q9H089 658 aaKnown RBP18.4■□□□□ 0.54
SS18-216ENST00000580751 CABP5Q9NP86 173 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 TSHZ2Q9NRE2 1034 aa18.4■□□□□ 0.54
SS18-216ENST00000580751 WDR33Q9C0J8 1336 aaKnown RBP18.4■□□□□ 0.54
SS18-216ENST00000580751 FAM155AB1AL88 458 aaPredicted RBP18.39■□□□□ 0.53
SS18-216ENST00000580751 SEC24BO95487 1268 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 PTPRAP18433 802 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 VEGFBP49765 207 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 HAND2P61296 217 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 PPIL2Q13356 520 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 STK11IPQ8N1F8 1099 aa18.39■□□□□ 0.53
SS18-216ENST00000580751 RNF41Q9H4P4 317 aaPredicted RBP18.39■□□□□ 0.53
SS18-216ENST00000580751 THSD7BQ9C0I4 1608 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 MPHOSPH10O00566 681 aaKnown RBP18.38■□□□□ 0.53
SS18-216ENST00000580751 GH2P01242 217 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 RASA1P20936 1047 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 RBM25P49756 843 aaKnown RBP18.38■□□□□ 0.53
SS18-216ENST00000580751 CTDSPL2Q05D32 466 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 TMEM179Q6ZVK1 233 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 USP26Q9BXU7 913 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 AS3MTQ9HBK9 375 aa18.38■□□□□ 0.53
SS18-216ENST00000580751 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.38■□□□□ 0.53
SS18-216ENST00000580751 RBM8AQ9Y5S9 174 aaKnown RBP18.38■□□□□ 0.53
SS18-216ENST00000580751 USP17L5A8MUK1 530 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 ORC4O43929 436 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 NT5C2P49902 561 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 AKNAD1Q5T1N1 836 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 MFSD6Q6ZSS7 791 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 ZNF444Q8N0Y2 327 aaPredicted RBP18.37■□□□□ 0.53
SS18-216ENST00000580751 STAG1Q8WVM7 1258 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 CNKSR2Q8WXI2 1034 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 TBC1D32Q96NH3 1257 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 ZHX2Q9Y6X8 837 aa18.37■□□□□ 0.53
SS18-216ENST00000580751 PRDM1O75626 825 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 FGRP09769 529 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 AKR1B1P15121 316 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 MCCP23508 829 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 GJA5P36382 358 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 MAP2K2P36507 400 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 JAG1P78504 1218 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 RAB3GAP1Q15042 981 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 TBC1D10CQ8IV04 446 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 REM2Q8IYK8 340 aaPredicted RBP18.36■□□□□ 0.53
SS18-216ENST00000580751 DNAJC5GQ8N7S2 189 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 C22orf23Q9BZE7 217 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 NBPF3Q9H094 633 aa18.36■□□□□ 0.53
SS18-216ENST00000580751 PLIN4Q96Q06 1357 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 MANSC4A6NHS7 340 aaPredicted RBP18.35■□□□□ 0.53
SS18-216ENST00000580751 IRF6O14896 467 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 GTF2A2P52657 109 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 MKRN3Q13064 507 aaKnown RBP18.35■□□□□ 0.53
SS18-216ENST00000580751 SNAPC2Q13487 334 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 SHROOM1Q2M3G4 852 aaPredicted RBP18.35■□□□□ 0.53
SS18-216ENST00000580751 ZNF280CQ8ND82 737 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 WDR18Q9BV38 432 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 TOMM22Q9NS69 142 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 FRMD4AQ9P2Q2 1039 aaPredicted RBP18.35■□□□□ 0.53
SS18-216ENST00000580751 KCNH4Q9UQ05 1017 aa18.35■□□□□ 0.53
SS18-216ENST00000580751 CXCL11O14625 94 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 AOC2O75106 756 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 CYP21A2P08686 494 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 TSPY3P0CV98 308 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 TSPY8P0CW00 308 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 ANAPC15P60006 121 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 SREBF2Q12772 1141 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 SEPT2Q15019 361 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 RNF20Q5VTR2 975 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 CNNM2Q9H8M5 875 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 AFG3L2Q9Y4W6 797 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 PHIPQ8WWQ0 1821 aa18.34■□□□□ 0.53
SS18-216ENST00000580751 GREB1LQ9C091 1923 aaPredicted RBP18.33■□□□□ 0.53
SS18-216ENST00000580751 TSPY2A6NKD2 308 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 RANBP6O60518 1105 aaKnown RBP18.33■□□□□ 0.52
SS18-216ENST00000580751 CETPP11597 493 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 GUCY1A2P33402 732 aa18.33■□□□□ 0.52
SS18-216ENST00000580751 INHBEP58166 350 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 8.5 ms