RNA–Protein interactions for RNA: ENST00000580670.6

CDK5RAP3-219, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 5

Gene CDK5RAP3, Length 1,768 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-219ENST00000580670 ZSCAN10Q96SZ4 725 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TRIM34Q9BYJ4 488 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ASTN2O75129 1339 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TNKSO95271 1327 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 KLF18A0A0U1RQI7 1052 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 LIFRP42702 1097 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TNFAIP1Q13829 316 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 NFXL1Q6ZNB6 911 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 FOXP4Q8IVH2 680 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 NECAB1Q8N987 351 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TMEM39BQ9GZU3 492 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SLKQ9H2G2 1235 aaPredicted RBP16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SENP2Q9HC62 589 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 HACL1Q9UJ83 578 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 BRPF3Q9ULD4 1205 aa16.26■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SIPA1L1O43166 1804 aa16.25■□□□□ 0.19
CDK5RAP3-219ENST00000580670 EVCP57679 992 aa16.25■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CCDC83Q8IWF9 413 aa16.25■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ZNF274Q96GC6 653 aaPredicted RBP16.25■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SCAF8Q9UPN6 1271 aaKnown RBP16.25■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CCDC69A6NI79 296 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 NMT2O60551 498 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SLURP2P0DP57 97 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 PDIA3P30101 505 aaKnown RBP16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SHMT1P34896 483 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 RASA3Q14644 834 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SEC23AQ15436 765 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SGMS1Q86VZ5 419 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TMTC2Q8N394 836 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ENAHQ8N8S7 591 aaPredicted RBP16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 DNAJC18Q9H819 358 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ADARB2Q9NS39 739 aaKnown RBP16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TAOK2Q9UL54 1235 aa16.24■□□□□ 0.19
CDK5RAP3-219ENST00000580670 GLTPD2A6NH11 291 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 FAM196BA6NMK8 535 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 GOLGA8BA8MQT2 603 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 PFKFB2O60825 505 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 HIRAP54198 1017 aaPredicted RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ST3GAL1Q11201 340 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ANGEL2Q5VTE6 544 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 METTL16Q86W50 562 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 INTS4Q96HW7 963 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 L3MBTL3Q96JM7 780 aaPredicted RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 MYH8P13535 1937 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CCDC178Q5BJE1 867 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 IFIT1BQ5T764 474 aaKnown RBP16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 APOA5Q6Q788 366 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 NEDD1Q8NHV4 660 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 GTF3C6Q969F1 213 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 IL17RBQ9NRM6 502 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TCP11L1Q9NUJ3 509 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SLC12A7Q9Y666 1083 aa16.23■□□□□ 0.19
CDK5RAP3-219ENST00000580670 AKR1B1P15121 316 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CCT2P78371 535 aaKnown RBP16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SCRN1Q12765 414 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 SYNE3Q6ZMZ3 975 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 RAB11FIP4Q86YS3 637 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 APOBEC3FQ8IUX4 373 aaKnown RBP16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CDAN1Q8IWY9 1227 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 GGA3Q9NZ52 723 aa16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 HERC5Q9UII4 1024 aaKnown RBP16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.22■□□□□ 0.19
CDK5RAP3-219ENST00000580670 TATDN1Q6P1N9 297 aa16.21■□□□□ 0.19
CDK5RAP3-219ENST00000580670 CCDC17Q96LX7 622 aa16.21■□□□□ 0.19
CDK5RAP3-219ENST00000580670 DEFB129Q9H1M3 183 aa16.21■□□□□ 0.19
CDK5RAP3-219ENST00000580670 PGAP2Q9UHJ9 254 aa16.21■□□□□ 0.19
CDK5RAP3-219ENST00000580670 HPS5Q9UPZ3 1129 aa16.21■□□□□ 0.19
CDK5RAP3-219ENST00000580670 PLIN4Q96Q06 1357 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 DCAF8L1A6NGE4 600 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 ZBTB43O43298 467 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CERKLQ49MI3 558 aaPredicted RBP16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 MICU3Q86XE3 530 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 DGKHQ86XP1 1220 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 MYL10Q9BUA6 226 aa16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 NCOA5Q9HCD5 579 aaKnown RBP16.21■□□□□ 0.18
CDK5RAP3-219ENST00000580670 MPHOSPH10O00566 681 aaKnown RBP16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 RXRAP19793 462 aa16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 METAP2P50579 478 aaKnown RBP eCLIP16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 RCSD1Q6JBY9 416 aa16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 ZNF654Q8IZM8 581 aa16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 TEPSINQ96N21 525 aa16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CWC22Q9HCG8 908 aaKnown RBP16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 SMC3Q9UQE7 1217 aa16.2■□□□□ 0.18
CDK5RAP3-219ENST00000580670 EPHX2P34913 555 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 GSE1Q14687 1217 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 NFKBIBQ15653 356 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 MIGA2Q7L4E1 593 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CATIPQ7Z7H3 387 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 ANKS1AQ92625 1134 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CHMP4CQ96CF2 233 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CEP95Q96GE4 821 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 STX8Q9UNK0 236 aa16.19■□□□□ 0.18
CDK5RAP3-219ENST00000580670 GOLGA8AA7E2F4 631 aa16.18■□□□□ 0.18
CDK5RAP3-219ENST00000580670 TBC1D12O60347 775 aa16.18■□□□□ 0.18
CDK5RAP3-219ENST00000580670 CCDC144CPQ8IYA2 1237 aa16.18■□□□□ 0.18
CDK5RAP3-219ENST00000580670 NUP133Q8WUM0 1156 aa16.18■□□□□ 0.18
CDK5RAP3-219ENST00000580670 KAT14Q9H8E8 782 aa16.18■□□□□ 0.18
CDK5RAP3-219ENST00000580670 PITPNM2Q9BZ72 1349 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms