RNA–Protein interactions for RNA: ENST00000580095.5

TOP3A-209, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 1 (best)

Gene TOP3A, Length 2,929 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-209ENST00000580095 CUTAO60888 179 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 AFMP43652 599 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 MYL5Q02045 173 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 SYT10Q6XYQ8 523 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 MTERF4Q7Z6M4 381 aaKnown RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 EPSTI1Q96J88 318 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 CSRNP2Q9H175 543 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 SRP68Q9UHB9 627 aaKnown RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 FBXO2Q9UK22 296 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 MYH7P12883 1935 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 USP17L12C9JPN9 530 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 USP17L21D6R901 530 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 ADAMTS3O15072 1205 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 CYP2D6P10635 497 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 TPM4P67936 248 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 PARP10Q53GL7 1025 aa12.04□□□□□ -0.48
TOP3A-209ENST00000580095 OSBPL5Q9H0X9 879 aaPredicted RBP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 AATFQ9NY61 560 aaKnown RBP eCLIP12.04□□□□□ -0.48
TOP3A-209ENST00000580095 SPATA31A1Q5TZJ5 1347 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 C4AP0C0L4 1744 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 C4BP0C0L5 1744 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 EP400Q96L91 3159 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 COL1A1P02452 1464 aaPredicted RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 NEMFO60524 1076 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 GSDMDP57764 484 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 FAM98CQ17RN3 349 aaKnown RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 KLHL10Q6JEL2 608 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 LINC00116Q8NCU8 138 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 ANKRD7Q92527 254 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 PPP1R13BQ96KQ4 1090 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 BPIFA3Q9BQP9 254 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 MINPP1Q9UNW1 487 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 A0A087X0B3 334 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 TOM1O60784 492 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 OLFM4Q6UX06 510 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 SMYD4Q8IYR2 804 aaPredicted RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 DHX58Q96C10 678 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 FAM84BQ96KN1 310 aaPredicted RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 CDC5LQ99459 802 aaKnown RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 RIOK1Q9BRS2 568 aaKnown RBP12.03□□□□□ -0.48
TOP3A-209ENST00000580095 INTS13Q9NVM9 706 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 MAN1B1Q9UKM7 699 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 PAXBP1Q9Y5B6 917 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 PNPLA7Q6ZV29 1317 aa12.03□□□□□ -0.48
TOP3A-209ENST00000580095 DEXIO95424 95 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 GNAT2P19087 354 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 PRDX5P30044 214 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 STX17P56962 302 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 PIP4K2BP78356 416 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 POSTNQ15063 836 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 SEC23AQ15436 765 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 TBC1D9BQ66K14 1250 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 ESR2Q92731 530 aa12.02□□□□□ -0.48
TOP3A-209ENST00000580095 PHLPP1O60346 1717 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 MDM2Q00987 491 aaPredicted RBP12.02□□□□□ -0.49
TOP3A-209ENST00000580095 AKAP17AQ02040 695 aaKnown RBP12.02□□□□□ -0.49
TOP3A-209ENST00000580095 ZNF174Q15697 407 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 IFIT1BQ5T764 474 aaKnown RBP12.02□□□□□ -0.49
TOP3A-209ENST00000580095 TXNRD3Q86VQ6 643 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 HOMER1Q86YM7 354 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 RGS22Q8NE09 1264 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 TIGD1Q96MW7 591 aa12.02□□□□□ -0.49
TOP3A-209ENST00000580095 TAF1P21675 1872 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 ZBTB22O15209 634 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 PTPREP23469 700 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 ELF2Q15723 593 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 PKN1Q16512 942 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 WASF1Q92558 559 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 AK7Q96M32 723 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 MED15Q96RN5 788 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 ZSCAN10Q96SZ4 725 aaPredicted RBP12.01□□□□□ -0.49
TOP3A-209ENST00000580095 RNF41Q9H4P4 317 aaPredicted RBP12.01□□□□□ -0.49
TOP3A-209ENST00000580095 SAMSN1Q9NSI8 373 aaKnown RBP12.01□□□□□ -0.49
TOP3A-209ENST00000580095 NFE2L3Q9Y4A8 694 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 MYH3P11055 1940 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 CDK11BP21127 795 aaKnown RBP12.01□□□□□ -0.49
TOP3A-209ENST00000580095 ADKP55263 362 aaKnown RBP12.01□□□□□ -0.49
TOP3A-209ENST00000580095 CAVIN4Q5BKX8 364 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 CERKQ8TCT0 537 aa12.01□□□□□ -0.49
TOP3A-209ENST00000580095 IKBKBO14920 756 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 MECOMQ03112 1051 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 CTR9Q6PD62 1173 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 AMIGO3Q86WK7 504 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 KIF18AQ8NI77 898 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 FOXP1Q9H334 677 aaPredicted RBP12□□□□□ -0.49
TOP3A-209ENST00000580095 STK36Q9NRP7 1315 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 IMPACTQ9P2X3 320 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 MYH14Q7Z406 1995 aaKnown RBP12□□□□□ -0.49
TOP3A-209ENST00000580095 CCDC196A0A1B0GTZ2 297 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 TOP1P11387 765 aaKnown RBP12□□□□□ -0.49
TOP3A-209ENST00000580095 CDC25AP30304 524 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 RILPL1Q5EBL4 403 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 CCDC150Q8NCX0 1101 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 GPR101Q96P66 508 aaPredicted RBP12□□□□□ -0.49
TOP3A-209ENST00000580095 GNL3LQ9NVN8 582 aaKnown RBP12□□□□□ -0.49
TOP3A-209ENST00000580095 SMARCE1Q969G3 411 aa12□□□□□ -0.49
TOP3A-209ENST00000580095 FANCGO15287 622 aa11.99□□□□□ -0.49
TOP3A-209ENST00000580095 CATIPQ7Z7H3 387 aa11.99□□□□□ -0.49
TOP3A-209ENST00000580095 DNAI1Q9UI46 699 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms