RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 TINF2Q9BSI4 451 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 FOXQ1Q9C009 403 aa7.75□□□□□ -1.17
NUP88-208ENST00000574087 DNAJA2O60884 412 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 ADAM23O75077 832 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 CST3P01034 146 aaPredicted RBP7.74□□□□□ -1.17
NUP88-208ENST00000574087 SOX9P48436 509 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 PRAMEF13Q5VWM6 474 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 GK5Q6ZS86 529 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 ZDHHC13Q8IUH4 622 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 FBXL6Q8N531 539 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 MFSD2AQ8NA29 543 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 DUSP23Q9BVJ7 150 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 GINM1Q9NU53 330 aa7.74□□□□□ -1.17
NUP88-208ENST00000574087 FAM170BA6NMN3 283 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 UPK3BL1B0FP48 263 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 UPK3BL2E5RIL1 263 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 GIMAP7Q8NHV1 300 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 CAPN10Q9HC96 672 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 PRDM10Q9NQV6 1147 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 EFR3BQ9Y2G0 817 aa7.73□□□□□ -1.17
NUP88-208ENST00000574087 PRR19A6NJB7 356 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 SLC22A31A6NKX4 558 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 WDR64B1ANS9 1081 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 CHURC1-FNTBB4DL54 471 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 LEFTY1O75610 366 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 FAM87AP0C7U9 286 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 SLFN12Q8IYM2 578 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 TOP6BLQ8N6T0 577 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 SEC16BQ96JE7 1060 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 DPH2Q9BQC3 489 aaPredicted RBP7.72□□□□□ -1.17
NUP88-208ENST00000574087 ZNRF3Q9ULT6 936 aa7.72□□□□□ -1.17
NUP88-208ENST00000574087 SLITRK5O94991 958 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 ATF4P18848 351 aaPredicted RBP7.71□□□□□ -1.18
NUP88-208ENST00000574087 ZC3H6P61129 1189 aaKnown RBP7.71□□□□□ -1.18
NUP88-208ENST00000574087 ZNF765Q7L2R6 523 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 FAM214BQ7L5A3 538 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 SLC43A3Q8NBI5 491 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 FAM13CQ8NE31 585 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 METTL22Q9BUU2 404 aaPredicted RBP7.71□□□□□ -1.18
NUP88-208ENST00000574087 GMIPQ9P107 970 aa7.71□□□□□ -1.18
NUP88-208ENST00000574087 MEIS3P2A8K0S8 358 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 EOMESO95936 686 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 IMPDH2P12268 514 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 YARSP54577 528 aaKnown RBP7.7□□□□□ -1.18
NUP88-208ENST00000574087 CYP27A1Q02318 531 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 MLECQ14165 292 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 CPSF6Q16630 551 aaKnown RBP eCLIP7.7□□□□□ -1.18
NUP88-208ENST00000574087 CYP27C1Q4G0S4 372 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 RBBP8NLQ8NC74 664 aaPredicted RBP7.7□□□□□ -1.18
NUP88-208ENST00000574087 RIN3Q8TB24 985 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 XAGE3Q8WTP9 111 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 OSBPL1AQ9BXW6 950 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 ANTXR1Q9H6X2 564 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 ATG3Q9NT62 314 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 KLHL3Q9UH77 587 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 PPT2Q9UMR5 302 aa7.7□□□□□ -1.18
NUP88-208ENST00000574087 NASPP49321 788 aaPredicted RBP7.69□□□□□ -1.18
NUP88-208ENST00000574087 GNL2Q13823 731 aaKnown RBP7.69□□□□□ -1.18
NUP88-208ENST00000574087 LRRFIP1Q32MZ4 808 aaKnown RBP7.69□□□□□ -1.18
NUP88-208ENST00000574087 CDCP2Q5VXM1 449 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 DUSP27Q5VZP5 1158 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 OVOS1Q6IE37 1185 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 TMEM40Q8WWA1 233 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 C8orf37Q96NL8 207 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 MIPEPQ99797 713 aa7.69□□□□□ -1.18
NUP88-208ENST00000574087 TGFB1P01137 390 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 NAALADL2Q58DX5 795 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 LETMD1Q6P1Q0 360 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 VPS37DQ86XT2 251 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 PPP1R13LQ8WUF5 828 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 CYB5D2Q8WUJ1 264 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 ATG4CQ96DT6 458 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 FERD3LQ96RJ6 166 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 GMLQ99445 158 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 CNNM2Q9H8M5 875 aa7.68□□□□□ -1.18
NUP88-208ENST00000574087 ARSHQ5FYA8 562 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 CCDC81Q6ZN84 652 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 DNAJB8Q8NHS0 232 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 HEXIM2Q96MH2 286 aaKnown RBP7.67□□□□□ -1.18
NUP88-208ENST00000574087 PIM2Q9P1W9 311 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 RNF112Q9ULX5 631 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 CEP131Q9UPN4 1083 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 CNTNAP4Q9C0A0 1308 aa7.67□□□□□ -1.18
NUP88-208ENST00000574087 RGS13O14921 159 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 NME1P15531 152 aaKnown RBP7.66□□□□□ -1.18
NUP88-208ENST00000574087 NLRC3Q7RTR2 1065 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 CDH24Q86UP0 819 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 CCDC74BQ96LY2 380 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 SRRTQ9BXP5 876 aaKnown RBP7.66□□□□□ -1.18
NUP88-208ENST00000574087 STRIP2Q9ULQ0 834 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 LEMD3Q9Y2U8 911 aa7.66□□□□□ -1.18
NUP88-208ENST00000574087 IGF2BP3O00425 579 aaKnown RBP eCLIP7.65□□□□□ -1.18
NUP88-208ENST00000574087 TNFRSF10CO14798 259 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 FGRP09769 529 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 FOSL1P15407 271 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 RAG1P15918 1043 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 GIPRP48546 466 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 ARID5AQ03989 594 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 FBXW10Q5XX13 1052 aa7.65□□□□□ -1.18
NUP88-208ENST00000574087 INTS3Q68E01 1043 aaKnown RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms