RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 PORCNQ9H237 461 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 RBPJLQ9UBG7 517 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 OGDHLQ9ULD0 1010 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 PALD1Q9ULE6 856 aa23.61■■□□□ 1.37
NUP88-203ENST00000572019 MAGEA10P43363 369 aaPredicted RBP23.6■■□□□ 1.37
NUP88-203ENST00000572019 HERVK_113P62684 666 aa23.6■■□□□ 1.37
NUP88-203ENST00000572019 IRX3P78415 501 aaPredicted RBP23.6■■□□□ 1.37
NUP88-203ENST00000572019 CCL14Q16627 93 aa23.6■■□□□ 1.37
NUP88-203ENST00000572019 NAA16Q6N069 864 aaPredicted RBP23.6■■□□□ 1.37
NUP88-203ENST00000572019 C11orf49Q9H6J7 331 aa23.6■■□□□ 1.37
NUP88-203ENST00000572019 AS3MTQ9HBK9 375 aa23.6■■□□□ 1.37
NUP88-203ENST00000572019 SAP30BPQ9UHR5 308 aaKnown RBP23.6■■□□□ 1.37
NUP88-203ENST00000572019 DLL1O00548 723 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 BCAR3O75815 825 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 GNAI2P04899 355 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 CYP2E1P05181 493 aaPredicted RBP23.59■■□□□ 1.37
NUP88-203ENST00000572019 CAPN2P17655 700 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 HOXA7P31268 230 aaPredicted RBP23.59■■□□□ 1.37
NUP88-203ENST00000572019 BMP8BP34820 402 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 METTL16Q86W50 562 aaKnown RBP23.59■■□□□ 1.37
NUP88-203ENST00000572019 CLUAP1Q96AJ1 413 aa23.59■■□□□ 1.37
NUP88-203ENST00000572019 ASNSP08243 561 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 UQCRFS1P1P0C7P4 283 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 CCND3P30281 292 aaPredicted RBP23.58■■□□□ 1.37
NUP88-203ENST00000572019 PPP4CP60510 307 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 DYNLL1P63167 89 aaKnown RBP23.58■■□□□ 1.37
NUP88-203ENST00000572019 G3BP1Q13283 466 aaKnown RBP eCLIP23.58■■□□□ 1.37
NUP88-203ENST00000572019 USP6NLQ92738 828 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 PIH1D3Q9NQM4 214 aaKnown RBP23.58■■□□□ 1.37
NUP88-203ENST00000572019 EMILIN3Q9NT22 766 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 ZBTB21Q9ULJ3 1066 aa23.58■■□□□ 1.37
NUP88-203ENST00000572019 CACNB2Q08289 660 aaPredicted RBP23.57■■□□□ 1.36
NUP88-203ENST00000572019 TNNI3KQ59H18 835 aa23.57■■□□□ 1.36
NUP88-203ENST00000572019 GPRC5AQ8NFJ5 357 aa23.57■■□□□ 1.36
NUP88-203ENST00000572019 DHX36Q9H2U1 1008 aaKnown RBP23.57■■□□□ 1.36
NUP88-203ENST00000572019 TMOD4Q9NZQ9 345 aa23.57■■□□□ 1.36
NUP88-203ENST00000572019 FPGT-TNNI3KV9GXZ4 949 aa23.57■■□□□ 1.36
NUP88-203ENST00000572019 NUDT12Q9BQG2 462 aa23.56■■□□□ 1.36
NUP88-203ENST00000572019 PAGR1Q9BTK6 254 aa23.56■■□□□ 1.36
NUP88-203ENST00000572019 A0A0C4DFX4 3053 aa23.56■■□□□ 1.36
NUP88-203ENST00000572019 USP17L10C9JJH3 530 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 COL6A1P12109 1028 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 ZAP70P43403 619 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 ERVK-9P63128 1117 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 ERVK-24P63145 666 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 POLA2Q14181 598 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 TTC39AQ5SRH9 613 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 MORN1Q5T089 497 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 LHX8Q68G74 356 aa23.55■■□□□ 1.36
NUP88-203ENST00000572019 FRAT1Q92837 279 aaPredicted RBP23.55■■□□□ 1.36
NUP88-203ENST00000572019 NOL10Q9BSC4 688 aaKnown RBP23.55■■□□□ 1.36
NUP88-203ENST00000572019 TLR7Q9NYK1 1049 aaKnown RBP23.55■■□□□ 1.36
NUP88-203ENST00000572019 CNMDO75829 334 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 XRCC5P13010 732 aaKnown RBP23.54■■□□□ 1.36
NUP88-203ENST00000572019 ATF7IPQ6VMQ6 1270 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 GPR142Q7Z601 462 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 CRACR2BQ8N4Y2 399 aaPredicted RBP23.54■■□□□ 1.36
NUP88-203ENST00000572019 TMEM57Q8N5G2 664 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 C1orf115Q9H7X2 142 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 NDUFB9Q9Y6M9 179 aa23.54■■□□□ 1.36
NUP88-203ENST00000572019 C19orf81C9J6K1 198 aa23.53■■□□□ 1.36
NUP88-203ENST00000572019 BAG3O95817 575 aa23.53■■□□□ 1.36
NUP88-203ENST00000572019 ZKSCAN1P17029 563 aaPredicted RBP23.53■■□□□ 1.36
NUP88-203ENST00000572019 ZYXQ15942 572 aaKnown RBP23.53■■□□□ 1.36
NUP88-203ENST00000572019 LRRC26Q2I0M4 334 aa23.53■■□□□ 1.36
NUP88-203ENST00000572019 FOXP4Q8IVH2 680 aaPredicted RBP23.53■■□□□ 1.36
NUP88-203ENST00000572019 DEFB123Q8N688 67 aa23.53■■□□□ 1.36
NUP88-203ENST00000572019 SOCS4Q8WXH5 440 aa23.53■■□□□ 1.36
NUP88-203ENST00000572019 GH2P01242 217 aa23.52■■□□□ 1.36
NUP88-203ENST00000572019 PLCG2P16885 1265 aa23.52■■□□□ 1.36
NUP88-203ENST00000572019 FLRT1Q9NZU1 646 aa23.52■■□□□ 1.36
NUP88-203ENST00000572019 DBNLQ9UJU6 430 aaKnown RBP23.52■■□□□ 1.36
NUP88-203ENST00000572019 DNAH12Q6ZR08 3092 aa23.52■■□□□ 1.36
NUP88-203ENST00000572019 CUL9Q8IWT3 2517 aa23.52■■□□□ 1.35
NUP88-203ENST00000572019 MAPK4P31152 587 aa23.51■■□□□ 1.35
NUP88-203ENST00000572019 LRIT3Q3SXY7 679 aa23.51■■□□□ 1.35
NUP88-203ENST00000572019 TDHQ8IZJ6 230 aa23.51■■□□□ 1.35
NUP88-203ENST00000572019 MIGA1Q8NAN2 632 aa23.51■■□□□ 1.35
NUP88-203ENST00000572019 GPR108Q9NPR9 543 aa23.51■■□□□ 1.35
NUP88-203ENST00000572019 PLEKHH3Q7Z736 793 aa23.5■■□□□ 1.35
NUP88-203ENST00000572019 SSH3Q8TE77 659 aa23.5■■□□□ 1.35
NUP88-203ENST00000572019 UBE2OQ9C0C9 1292 aaKnown RBP23.5■■□□□ 1.35
NUP88-203ENST00000572019 CYP7A1P22680 504 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 EVX2Q03828 476 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 PDE3AQ14432 1141 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 CCDC158Q5M9N0 1113 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 USP17L2Q6R6M4 530 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 ACER1Q8TDN7 264 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 APBA2Q99767 749 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 TRIM34Q9BYJ4 488 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 MTMR10Q9NXD2 777 aa23.49■■□□□ 1.35
NUP88-203ENST00000572019 RGS2P41220 211 aa23.48■■□□□ 1.35
NUP88-203ENST00000572019 MDM2Q00987 491 aaPredicted RBP23.48■■□□□ 1.35
NUP88-203ENST00000572019 CCDC8Q9H0W5 538 aaPredicted RBP23.48■■□□□ 1.35
NUP88-203ENST00000572019 ANTXR1Q9H6X2 564 aa23.48■■□□□ 1.35
NUP88-203ENST00000572019 RLFQ13129 1914 aa23.48■■□□□ 1.35
NUP88-203ENST00000572019 LTBP2Q14767 1821 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 NAV1Q8NEY1 1877 aa23.47■■□□□ 1.35
NUP88-203ENST00000572019 IPO8O15397 1037 aaKnown RBP23.47■■□□□ 1.35
NUP88-203ENST00000572019 SURF6O75683 361 aaKnown RBP23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms