RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 PTCH2Q9Y6C5 1203 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 DDX60LQ5H9U9 1706 aaKnown RBP16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 MYH8P13535 1937 aa16.47■□□□□ 0.23
VPS9D1-204ENST00000565023 ADGRA2Q96PE1 1338 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 LOC285556D6RIA3 1793 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 PRKAB2O43741 272 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 FMNL1O95466 1100 aaPredicted RBP16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 ASNSP08243 561 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 PLCD1P51178 756 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 MTMR2Q13614 643 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 EXOC6Q8TAG9 804 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 SERPINB13Q9UIV8 391 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 ZBTB21Q9ULJ3 1066 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 AGTPBP1Q9UPW5 1226 aa16.46■□□□□ 0.23
VPS9D1-204ENST00000565023 GH2P01242 217 aa16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 CYP2D6P10635 497 aa16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 CTGFP29279 349 aa16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 PSMC4P43686 418 aa16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 TMED8Q6PL24 325 aaPredicted RBP16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 OTUD7AQ8TE49 926 aaPredicted RBP16.45■□□□□ 0.22
VPS9D1-204ENST00000565023 RAB3GAP1Q15042 981 aa16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 ZYXQ15942 572 aaKnown RBP16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 METTL16Q86W50 562 aaKnown RBP16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 TRIM47Q96LD4 638 aa16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 TBC1D2Q9BYX2 928 aa16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 TMOD4Q9NZQ9 345 aa16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 ZBTB47Q9UFB7 747 aaPredicted RBP16.44■□□□□ 0.22
VPS9D1-204ENST00000565023 MPHOSPH10O00566 681 aaKnown RBP16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 BCRP11274 1271 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 CERKLQ49MI3 558 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 SLC9C1Q4G0N8 1177 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 ZSCAN25Q6NSZ9 544 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 ANKRD13CQ8N6S4 541 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 PROCA1Q8NCQ7 364 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 SH3TC2Q8TF17 1288 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 FEZ1Q99689 392 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 DCP1AQ9NPI6 582 aaPredicted RBP16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 PNMA3Q9UL41 463 aa16.43■□□□□ 0.22
VPS9D1-204ENST00000565023 CYP2D7A0A087X1C5 515 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 OSBPP22059 807 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 BACE1P56817 501 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 HDAC1Q13547 482 aaPredicted RBP16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 UBE3CQ15386 1083 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 ABCB5Q2M3G0 1257 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 ANKRD45Q5TZF3 282 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 SLC44A5Q8NCS7 719 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 DYNLL2Q96FJ2 89 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 WDR18Q9BV38 432 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 PUS7LQ9H0K6 701 aaKnown RBP16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 EHD4Q9H223 541 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 CABP5Q9NP86 173 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 SLC45A1Q9Y2W3 748 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 SLC4A4Q9Y6R1 1079 aa16.42■□□□□ 0.22
VPS9D1-204ENST00000565023 POTEFA5A3E0 1075 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 USP17L10C9JJH3 530 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 SHMT1P34896 483 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 FCGRTP55899 365 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 IRX3P78415 501 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 PABPC4Q13310 644 aaKnown RBP eCLIP16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 SH3D19Q5HYK7 790 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 TATDN1Q6P1N9 297 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 ASCC2Q9H1I8 757 aaPredicted RBP16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 TAOK2Q9UL54 1235 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 DOCK3Q8IZD9 2030 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 MYPNQ86TC9 1320 aa16.41■□□□□ 0.22
VPS9D1-204ENST00000565023 SMIM22K7EJ46 135 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 HOXD10P28358 340 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 IRX6P78412 446 aaPredicted RBP16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 STK11IPQ8N1F8 1099 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 KBTBD3Q8NAB2 608 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 RAET1EQ8TD07 263 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 GINM1Q9NU53 330 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 SRRDQ9UH36 339 aa16.4■□□□□ 0.22
VPS9D1-204ENST00000565023 C19orf81C9J6K1 198 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 TNPO2O14787 897 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 PEX10O60683 326 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 PRKCZQ05513 592 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 SEPT2Q15019 361 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 NBPF11Q86T75 865 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 AMOTL1Q8IY63 956 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 ACER1Q8TDN7 264 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 ARMC5Q96C12 935 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 DDRGK1Q96HY6 314 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 GABRQQ9UN88 632 aa16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 KIAA0100Q14667 2235 aaKnown RBP16.39■□□□□ 0.21
VPS9D1-204ENST00000565023 USP17L12C9JPN9 530 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 USP17L21D6R901 530 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 ERC2O15083 957 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 RNF113AO15541 343 aaKnown RBP16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 GNRH1P01148 92 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 MX1P20591 662 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 GABPAQ06546 454 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 USP17L2Q6R6M4 530 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 FSD1Q9BTV5 496 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 EMILIN3Q9NT22 766 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 ATP8A2Q9NTI2 1148 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 BIN2Q9UBW5 565 aaPredicted RBP16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 TTC41PQ6P2S7 1318 aa16.38■□□□□ 0.21
VPS9D1-204ENST00000565023 GLRX3O76003 335 aaKnown RBP16.37■□□□□ 0.21
VPS9D1-204ENST00000565023 PRMT2P55345 433 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms