RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 SRRDQ9UH36 339 aa20.37■□□□□ 0.85
CLK3-210ENST00000563112 C19orf81C9J6K1 198 aa20.36■□□□□ 0.85
CLK3-210ENST00000563112 BACE1P56817 501 aa20.36■□□□□ 0.85
CLK3-210ENST00000563112 ZSCAN25Q6NSZ9 544 aa20.36■□□□□ 0.85
CLK3-210ENST00000563112 ECHDC1Q9NTX5 307 aa20.36■□□□□ 0.85
CLK3-210ENST00000563112 ZBTB21Q9ULJ3 1066 aa20.36■□□□□ 0.85
CLK3-210ENST00000563112 TCRBV5S4A2TA0A5A2 114 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 USP17L10C9JJH3 530 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 ADD2P35612 726 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 TATDN1Q6P1N9 297 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 RAET1EQ8TD07 263 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 ZNF333Q96JL9 665 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 MCM9Q9NXL9 1143 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 KIAA0100Q14667 2235 aaKnown RBP20.35■□□□□ 0.85
CLK3-210ENST00000563112 PDE4DIPQ5VU43 2346 aa20.35■□□□□ 0.85
CLK3-210ENST00000563112 ZSWIM8A7E2V4 1837 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 MYPNQ86TC9 1320 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 CTGFP29279 349 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 GCLCP48506 637 aaPredicted RBP20.34■□□□□ 0.85
CLK3-210ENST00000563112 JAG1P78504 1218 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 MTMR2Q13614 643 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 LCORLQ8N3X6 602 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 CABP5Q9NP86 173 aa20.34■□□□□ 0.85
CLK3-210ENST00000563112 HTTP42858 3142 aa20.33■□□□□ 0.85
CLK3-210ENST00000563112 GH2P01242 217 aa20.33■□□□□ 0.85
CLK3-210ENST00000563112 UBE3CQ15386 1083 aa20.33■□□□□ 0.85
CLK3-210ENST00000563112 CERKLQ49MI3 558 aaPredicted RBP20.33■□□□□ 0.85
CLK3-210ENST00000563112 ARMT1Q9H993 441 aa20.33■□□□□ 0.85
CLK3-210ENST00000563112 LOC285556D6RIA3 1793 aa20.33■□□□□ 0.84
CLK3-210ENST00000563112 PLCD1P51178 756 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 IRX3P78415 501 aaPredicted RBP20.32■□□□□ 0.84
CLK3-210ENST00000563112 FAM110CQ1W6H9 321 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 ABCB5Q2M3G0 1257 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 ANKRD13CQ8N6S4 541 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 SH3TC2Q8TF17 1288 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 SDR42E1Q8WUS8 393 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 DDRGK1Q96HY6 314 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 ASCC2Q9H1I8 757 aaPredicted RBP20.32■□□□□ 0.84
CLK3-210ENST00000563112 DCP1AQ9NPI6 582 aaPredicted RBP20.32■□□□□ 0.84
CLK3-210ENST00000563112 ATP8A2Q9NTI2 1148 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 PCDHB15Q9Y5E8 787 aa20.32■□□□□ 0.84
CLK3-210ENST00000563112 TNRC18O15417 2968 aaPredicted RBP20.32■□□□□ 0.84
CLK3-210ENST00000563112 NAV1Q8NEY1 1877 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 POTEFA5A3E0 1075 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 TNPO2O14787 897 aaKnown RBP20.31■□□□□ 0.84
CLK3-210ENST00000563112 MBD4O95243 580 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 SHROOM1Q2M3G4 852 aaPredicted RBP20.31■□□□□ 0.84
CLK3-210ENST00000563112 USP17L2Q6R6M4 530 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 AMOTL1Q8IY63 956 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 FEZ1Q99689 392 aa20.31■□□□□ 0.84
CLK3-210ENST00000563112 HOXA7P31268 230 aaPredicted RBP20.3■□□□□ 0.84
CLK3-210ENST00000563112 GRK4P32298 578 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 PRKCZQ05513 592 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 RAB3GAP1Q15042 981 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 COA7Q96BR5 231 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 ZBTB47Q9UFB7 747 aaPredicted RBP20.3■□□□□ 0.84
CLK3-210ENST00000563112 TAOK2Q9UL54 1235 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 MGAMO43451 1857 aa20.3■□□□□ 0.84
CLK3-210ENST00000563112 MYCP01106 439 aaPredicted RBP20.29■□□□□ 0.84
CLK3-210ENST00000563112 SHMT1P34896 483 aa20.29■□□□□ 0.84
CLK3-210ENST00000563112 USP14P54578 494 aa20.29■□□□□ 0.84
CLK3-210ENST00000563112 SLFNL1Q499Z3 407 aa20.29■□□□□ 0.84
CLK3-210ENST00000563112 BIN2Q9UBW5 565 aaPredicted RBP20.29■□□□□ 0.84
CLK3-210ENST00000563112 MYH7P12883 1935 aa20.29■□□□□ 0.84
CLK3-210ENST00000563112 PRKAB2O43741 272 aa20.28■□□□□ 0.84
CLK3-210ENST00000563112 GABPAQ06546 454 aa20.28■□□□□ 0.84
CLK3-210ENST00000563112 CRBNQ96SW2 442 aa20.28■□□□□ 0.84
CLK3-210ENST00000563112 SWAP70Q9UH65 585 aa20.28■□□□□ 0.84
CLK3-210ENST00000563112 RBBP6Q7Z6E9 1792 aaKnown RBP20.28■□□□□ 0.84
CLK3-210ENST00000563112 MPHOSPH10O00566 681 aaKnown RBP20.27■□□□□ 0.84
CLK3-210ENST00000563112 ERC2O15083 957 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 UBXN2AP68543 259 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 LRRFIP1Q32MZ4 808 aaKnown RBP20.27■□□□□ 0.84
CLK3-210ENST00000563112 KBTBD3Q8NAB2 608 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 SLAIN1Q8ND83 568 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 P2RX7Q99572 595 aaKnown RBP20.27■□□□□ 0.84
CLK3-210ENST00000563112 EMILIN3Q9NT22 766 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 GABRQQ9UN88 632 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 SLC4A4Q9Y6R1 1079 aa20.27■□□□□ 0.84
CLK3-210ENST00000563112 DDX60LQ5H9U9 1706 aaKnown RBP20.27■□□□□ 0.83
CLK3-210ENST00000563112 TTC41PQ6P2S7 1318 aa20.27■□□□□ 0.83
CLK3-210ENST00000563112 CYP2D6P10635 497 aa20.26■□□□□ 0.83
CLK3-210ENST00000563112 EN2P19622 333 aaPredicted RBP20.26■□□□□ 0.83
CLK3-210ENST00000563112 FLT3LGP49771 235 aa20.26■□□□□ 0.83
CLK3-210ENST00000563112 ZYXQ15942 572 aaKnown RBP20.26■□□□□ 0.83
CLK3-210ENST00000563112 GTF3C2Q8WUA4 911 aaPredicted RBP20.26■□□□□ 0.83
CLK3-210ENST00000563112 MORF4L1Q9UBU8 362 aa20.26■□□□□ 0.83
CLK3-210ENST00000563112 ADCY3O60266 1144 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 ZFYP08048 801 aaPredicted RBP20.25■□□□□ 0.83
CLK3-210ENST00000563112 HERVK_113P62684 666 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 IRF5Q13568 498 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 TSHZ3Q63HK5 1081 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 C12orf42Q96LP6 360 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 KIAA1683Q9H0B3 1180 aa20.25■□□□□ 0.83
CLK3-210ENST00000563112 PUS7LQ9H0K6 701 aaKnown RBP20.25■□□□□ 0.83
CLK3-210ENST00000563112 USP17L15C9J2P7 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L13C9JLJ4 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L12C9JPN9 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L11C9JVI0 530 aa20.24■□□□□ 0.83
CLK3-210ENST00000563112 USP17L21D6R901 530 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms