RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ANKRD45Q5TZF3 282 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 OTUD7AQ8TE49 926 aaPredicted RBP18.9■□□□□ 0.62
VPS39-203ENST00000561797 EHD4Q9H223 541 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 DCP1AQ9NPI6 582 aaPredicted RBP18.9■□□□□ 0.62
VPS39-203ENST00000561797 ZBTB47Q9UFB7 747 aaPredicted RBP18.9■□□□□ 0.62
VPS39-203ENST00000561797 ZBTB21Q9ULJ3 1066 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 AGTPBP1Q9UPW5 1226 aa18.9■□□□□ 0.62
VPS39-203ENST00000561797 GH2P01242 217 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 EVX2Q03828 476 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 TATDN1Q6P1N9 297 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 PROCA1Q8NCQ7 364 aaPredicted RBP18.89■□□□□ 0.61
VPS39-203ENST00000561797 WDR18Q9BV38 432 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 SLC45A1Q9Y2W3 748 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 DOCK3Q8IZD9 2030 aa18.89■□□□□ 0.61
VPS39-203ENST00000561797 CYP2D6P10635 497 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 PSMC4P43686 418 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 MTMR2Q13614 643 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 CERKLQ49MI3 558 aaPredicted RBP18.88■□□□□ 0.61
VPS39-203ENST00000561797 KBTBD3Q8NAB2 608 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 SMCR8Q8TEV9 937 aaPredicted RBP18.88■□□□□ 0.61
VPS39-203ENST00000561797 PUS7LQ9H0K6 701 aaKnown RBP18.88■□□□□ 0.61
VPS39-203ENST00000561797 GINM1Q9NU53 330 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 TTC41PQ6P2S7 1318 aa18.88■□□□□ 0.61
VPS39-203ENST00000561797 ERC2O15083 957 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 BCRP11274 1271 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 CTGFP29279 349 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 SHMT1P34896 483 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 RGS19P49795 217 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 HDAC1Q13547 482 aaPredicted RBP18.87■□□□□ 0.61
VPS39-203ENST00000561797 SH3D19Q5HYK7 790 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 EXOC6Q8TAG9 804 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 GCC1Q96CN9 775 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 ATP8A2Q9NTI2 1148 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 TMOD4Q9NZQ9 345 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 SUPT16HQ9Y5B9 1047 aaKnown RBP18.87■□□□□ 0.61
VPS39-203ENST00000561797 PTCH2Q9Y6C5 1203 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 SLC4A4Q9Y6R1 1079 aa18.87■□□□□ 0.61
VPS39-203ENST00000561797 USP17L10C9JJH3 530 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 FMNL1O95466 1100 aaPredicted RBP18.86■□□□□ 0.61
VPS39-203ENST00000561797 MX1P20591 662 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 BACE1P56817 501 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 RAB3GAP1Q15042 981 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 ABCB5Q2M3G0 1257 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 CABP5Q9NP86 173 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 PNMA3Q9UL41 463 aa18.86■□□□□ 0.61
VPS39-203ENST00000561797 C19orf81C9J6K1 198 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 RNF113AO15541 343 aaKnown RBP18.85■□□□□ 0.61
VPS39-203ENST00000561797 OSBPP22059 807 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 MLLT1Q03111 559 aaPredicted RBP18.85■□□□□ 0.61
VPS39-203ENST00000561797 GABPAQ06546 454 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 PABPC4Q13310 644 aaKnown RBP eCLIP18.85■□□□□ 0.61
VPS39-203ENST00000561797 AAMPQ13685 434 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 PI4K2BQ8TCG2 481 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 DYNLL2Q96FJ2 89 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 TRIM47Q96LD4 638 aa18.85■□□□□ 0.61
VPS39-203ENST00000561797 RBBP6Q7Z6E9 1792 aaKnown RBP18.84■□□□□ 0.61
VPS39-203ENST00000561797 CYP2D7A0A087X1C5 515 aa18.84■□□□□ 0.61
VPS39-203ENST00000561797 GLRX3O76003 335 aaKnown RBP18.84■□□□□ 0.61
VPS39-203ENST00000561797 GNRH1P01148 92 aa18.84■□□□□ 0.61
VPS39-203ENST00000561797 ZYXQ15942 572 aaKnown RBP18.84■□□□□ 0.61
VPS39-203ENST00000561797 ANKRD13CQ8N6S4 541 aa18.84■□□□□ 0.61
VPS39-203ENST00000561797 SLC44A5Q8NCS7 719 aa18.84■□□□□ 0.61
VPS39-203ENST00000561797 DDRGK1Q96HY6 314 aa18.84■□□□□ 0.61
VPS39-203ENST00000561797 USP17L12C9JPN9 530 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 USP17L21D6R901 530 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 SMIM22K7EJ46 135 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 MPHOSPH10O00566 681 aaKnown RBP18.83■□□□□ 0.6
VPS39-203ENST00000561797 SLC9C1Q4G0N8 1177 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 AMOTL1Q8IY63 956 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 APPBP2Q92624 585 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 OSBP2Q969R2 916 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 STRBPQ96SI9 672 aaKnown RBP18.83■□□□□ 0.6
VPS39-203ENST00000561797 FEZ1Q99689 392 aa18.83■□□□□ 0.6
VPS39-203ENST00000561797 ASCC2Q9H1I8 757 aaPredicted RBP18.83■□□□□ 0.6
VPS39-203ENST00000561797 RWDD1Q9H446 243 aaPredicted RBP18.83■□□□□ 0.6
VPS39-203ENST00000561797 ZFYP08048 801 aaPredicted RBP18.82■□□□□ 0.6
VPS39-203ENST00000561797 HOXD10P28358 340 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 FCGRTP55899 365 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 IRX3P78415 501 aaPredicted RBP18.82■□□□□ 0.6
VPS39-203ENST00000561797 SEPT2Q15019 361 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 C12orf60Q5U649 245 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 USP17L2Q6R6M4 530 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 FSD1Q9BTV5 496 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 EMILIN3Q9NT22 766 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 SRRDQ9UH36 339 aa18.82■□□□□ 0.6
VPS39-203ENST00000561797 MYPNQ86TC9 1320 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 SALL3Q9BXA9 1300 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 GUCY1A2P33402 732 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 PRMT2P55345 433 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 LRRFIP1Q32MZ4 808 aaKnown RBP18.81■□□□□ 0.6
VPS39-203ENST00000561797 B4GALNT3Q6L9W6 998 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 CTR9Q6PD62 1173 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 ACER1Q8TDN7 264 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 SH3TC2Q8TF17 1288 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 ARMC5Q96C12 935 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 SWAP70Q9UH65 585 aa18.81■□□□□ 0.6
VPS39-203ENST00000561797 M0R2C6 588 aa18.8■□□□□ 0.6
VPS39-203ENST00000561797 MYCP01106 439 aaPredicted RBP18.8■□□□□ 0.6
VPS39-203ENST00000561797 IGHDP01880 384 aa18.8■□□□□ 0.6
VPS39-203ENST00000561797 GCLCP48506 637 aaPredicted RBP18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms