RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TNNQ9UQP3 1299 aa11.21□□□□□ -0.61
HDDC3-204ENST00000559834 MKI67P46013 3256 aaKnown RBP11.2□□□□□ -0.62
HDDC3-204ENST00000559834 TRIOBPQ9H2D6 2365 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 FLT1P17948 1338 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 CYP2B6P20813 491 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 CYP7A1P22680 504 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 MAPK4P31152 587 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 ZAP70P43403 619 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 HERVK_113P62684 666 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 PDE3AQ14432 1141 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 TMED8Q6PL24 325 aaPredicted RBP11.2□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L2Q6R6M4 530 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 FTSJ3Q8IY81 847 aaKnown RBP11.2□□□□□ -0.62
HDDC3-204ENST00000559834 SOCS4Q8WXH5 440 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 PRO3102Q9H379 93 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 NOP58Q9Y2X3 529 aaKnown RBP11.2□□□□□ -0.62
HDDC3-204ENST00000559834 CENPFP49454 3210 aa11.2□□□□□ -0.62
HDDC3-204ENST00000559834 DOCK3Q8IZD9 2030 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 PTPRFP10586 1907 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 PHIPQ8WWQ0 1821 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 IDH1O75874 414 aaKnown RBP11.19□□□□□ -0.62
HDDC3-204ENST00000559834 GDF11O95390 407 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 USP5P45974 858 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 TTC6Q86TZ1 520 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 RBPJLQ9UBG7 517 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 STAP2Q9UGK3 403 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 SAP30BPQ9UHR5 308 aaKnown RBP11.19□□□□□ -0.62
HDDC3-204ENST00000559834 ZBTB21Q9ULJ3 1066 aa11.19□□□□□ -0.62
HDDC3-204ENST00000559834 GLRX3O76003 335 aaKnown RBP11.18□□□□□ -0.62
HDDC3-204ENST00000559834 BMP8BP34820 402 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 CCNA1P78396 465 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 MAP3K12Q12852 859 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 ADGRA1Q86SQ6 560 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 ITPRIPQ8IWB1 547 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 TRIB2Q92519 343 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 CCDC8Q9H0W5 538 aaPredicted RBP11.18□□□□□ -0.62
HDDC3-204ENST00000559834 C11orf49Q9H6J7 331 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 DNAJC18Q9H819 358 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 CWC22Q9HCG8 908 aaKnown RBP11.18□□□□□ -0.62
HDDC3-204ENST00000559834 PIH1D3Q9NQM4 214 aaKnown RBP11.18□□□□□ -0.62
HDDC3-204ENST00000559834 EMILIN3Q9NT22 766 aa11.18□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L15C9J2P7 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L13C9JLJ4 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L11C9JVI0 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L18D6R9N7 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L22D6RA61 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L17D6RBQ6 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L19D6RCP7 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L20D6RJB6 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 GH2P01242 217 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 PRKAR2AP13861 404 aaKnown RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 ZKSCAN1P17029 563 aaPredicted RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 RGS2P41220 211 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP14P54578 494 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 ERVK-9P63128 1117 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 ERVK-24P63145 666 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 DYNLL1P63167 89 aaKnown RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 JAG1P78504 1218 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 USP17L24Q0WX57 530 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 TRIM32Q13049 653 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 Q3C1V9 767 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 CERKLQ49MI3 558 aaPredicted RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 MAP3K21Q5TCX8 1036 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 TATDN1Q6P1N9 297 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 PLEKHH3Q7Z736 793 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 ERC1Q8IUD2 1116 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 MAGEB6Q8N7X4 407 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 DIS3LQ8TF46 1054 aaKnown RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 EAF2Q96CJ1 260 aaPredicted RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 FEZ1Q99689 392 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 PAGR1Q9BTK6 254 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 TXNRD2Q9NNW7 524 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 CABP5Q9NP86 173 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 SERPINB13Q9UIV8 391 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 DBNLQ9UJU6 430 aaKnown RBP11.17□□□□□ -0.62
HDDC3-204ENST00000559834 OGDHLQ9ULD0 1010 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 RABGAP1Q9Y3P9 1069 aa11.17□□□□□ -0.62
HDDC3-204ENST00000559834 TTF1Q15361 905 aaPredicted RBP11.16□□□□□ -0.62
HDDC3-204ENST00000559834 HSP90AB4PQ58FF6 505 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 GPR142Q7Z601 462 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 C7orf61Q8IZ16 206 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 MIGA1Q8NAN2 632 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 C12orf42Q96LP6 360 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 EHD4Q9H223 541 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 C1orf115Q9H7X2 142 aa11.16□□□□□ -0.62
HDDC3-204ENST00000559834 POLR3DP05423 398 aaPredicted RBP11.15□□□□□ -0.62
HDDC3-204ENST00000559834 CACNB2Q08289 660 aaPredicted RBP11.15□□□□□ -0.62
HDDC3-204ENST00000559834 RAB3GAP1Q15042 981 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 ABCB5Q2M3G0 1257 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 MORN1Q5T089 497 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 MFSD14CQ5VZR4 134 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 CATSPERGQ6ZRH7 1159 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 USP6NLQ92738 828 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 EDC3Q96F86 508 aaKnown RBP11.15□□□□□ -0.62
HDDC3-204ENST00000559834 APBA2Q99767 749 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 GDF15Q99988 308 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 KIAA1683Q9H0B3 1180 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 PORCNQ9H237 461 aa11.15□□□□□ -0.62
HDDC3-204ENST00000559834 ZMYND8Q9ULU4 1186 aaPredicted RBP11.15□□□□□ -0.62
HDDC3-204ENST00000559834 LOC285556D6RIA3 1793 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 227.7 ms