RNA–Protein interactions for RNA: ENST00000557024.1

SYNE2-224, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 998 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-224ENST00000557024 MORF4L1Q9UBU8 362 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 PRUNE2Q8WUY3 3088 aa11.59□□□□□ -0.55
SYNE2-224ENST00000557024 XRCC5P13010 732 aaKnown RBP11.58□□□□□ -0.56
SYNE2-224ENST00000557024 BTDP43251 543 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 PHKA1P46020 1223 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 IRX3P78415 501 aaPredicted RBP11.58□□□□□ -0.56
SYNE2-224ENST00000557024 CCL14Q16627 93 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 ATP2B3Q16720 1220 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 ATG9AQ7Z3C6 839 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 WDR63Q8IWG1 891 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 MS4A3Q96HJ5 214 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 SENP6Q9GZR1 1112 aaPredicted RBP11.58□□□□□ -0.56
SYNE2-224ENST00000557024 DENND2AQ9ULE3 1009 aa11.58□□□□□ -0.56
SYNE2-224ENST00000557024 AK9Q5TCS8 1911 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 TBC1D12O60347 775 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 RFX5P48382 616 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 ATN1P54259 1190 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 PDE3AQ14432 1141 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 RRP1BQ14684 758 aaKnown RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 TRMT44Q8IYL2 757 aaKnown RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 GPRC5AQ8NFJ5 357 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 MYLIPQ8WY64 445 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 P2RX7Q99572 595 aaKnown RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 OSBPL5Q9H0X9 879 aaPredicted RBP11.57□□□□□ -0.56
SYNE2-224ENST00000557024 SIL1Q9H173 461 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 SEMA6BQ9H3T3 888 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 TXNRD2Q9NNW7 524 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 ABCF2Q9UG63 623 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 DOCK2Q92608 1830 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 DOCK1Q14185 1865 aa11.57□□□□□ -0.56
SYNE2-224ENST00000557024 USP17L5A8MUK1 530 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 SEMA3EO15041 775 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 CAP2P40123 477 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 MTMR2Q13614 643 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 SH3D19Q5HYK7 790 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 DNAH12Q6ZR08 3092 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 SLF2Q8IX21 1173 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 TTC28Q96AY4 2481 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 MROH7-TTC4A0A0A0MT08 1334 aa11.56□□□□□ -0.56
SYNE2-224ENST00000557024 PTPRFP10586 1907 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 COL9A1P20849 921 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 ADORA1P30542 326 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 MAPK4P31152 587 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 RGS2P41220 211 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 RHBDL3P58872 404 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 HERVK_113P62684 666 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 RASGRF1Q13972 1273 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 SHHQ15465 462 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 C9orf50Q5SZB4 431 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 CCAR1Q8IX12 1150 aaKnown RBP11.55□□□□□ -0.56
SYNE2-224ENST00000557024 ZGPATQ8N5A5 531 aaKnown RBP11.55□□□□□ -0.56
SYNE2-224ENST00000557024 USP6NLQ92738 828 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 FAM163AQ96GL9 167 aaPredicted RBP11.55□□□□□ -0.56
SYNE2-224ENST00000557024 YTHDC1Q96MU7 727 aaKnown RBP11.55□□□□□ -0.56
SYNE2-224ENST00000557024 APBA2Q99767 749 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 TBC1D2Q9BYX2 928 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 USP44Q9H0E7 712 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 PORCNQ9H237 461 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 CEP126Q9P2H0 1117 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 PRKAG2Q9UGJ0 569 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 PHIPQ8WWQ0 1821 aa11.55□□□□□ -0.56
SYNE2-224ENST00000557024 DOCK3Q8IZD9 2030 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 FOSL2P15408 326 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 RTP1P59025 263 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 MECOMQ03112 1051 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 MORN1Q5T089 497 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 CCDC102BQ68D86 513 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 GPR142Q7Z601 462 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 SYMPKQ92797 1274 aaKnown RBP11.54□□□□□ -0.56
SYNE2-224ENST00000557024 PAGR1Q9BTK6 254 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 TTYH1Q9H313 450 aaPredicted RBP11.54□□□□□ -0.56
SYNE2-224ENST00000557024 AS3MTQ9HBK9 375 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 WDR70Q9NW82 654 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 TMOD4Q9NZQ9 345 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 RBPJLQ9UBG7 517 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 RAPGEFL1Q9UHV5 662 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 LOC285556D6RIA3 1793 aa11.54□□□□□ -0.56
SYNE2-224ENST00000557024 GPR75-ASB3A0A0A6YYF3 556 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 HOXA7P31268 230 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-224ENST00000557024 BACE1P56817 501 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 ERVK-9P63128 1117 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 ERVK-24P63145 666 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 Q3C1V9 767 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 SPTY2D1Q68D10 685 aaPredicted RBP11.53□□□□□ -0.56
SYNE2-224ENST00000557024 PLEKHH3Q7Z736 793 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 ZNF384Q8TF68 577 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 CWC22Q9HCG8 908 aaKnown RBP11.53□□□□□ -0.56
SYNE2-224ENST00000557024 ATP11BQ9Y2G3 1177 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 NDUFB9Q9Y6M9 179 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 CACNA1FO60840 1977 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 PLXNB2O15031 1838 aa11.53□□□□□ -0.56
SYNE2-224ENST00000557024 CIAO1O76071 339 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 CNGA1P29973 690 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 JAG1P78504 1218 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 HNRNPUQ00839 825 aaKnown RBP eCLIP11.52□□□□□ -0.57
SYNE2-224ENST00000557024 SHROOM1Q2M3G4 852 aaPredicted RBP11.52□□□□□ -0.57
SYNE2-224ENST00000557024 MFSD14CQ5VZR4 134 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 POTEEQ6S8J3 1075 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 WDR18Q9BV38 432 aa11.52□□□□□ -0.57
SYNE2-224ENST00000557024 PRDM5Q9NQX1 630 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms