RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 CTR9Q6PD62 1173 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 SEC62Q99442 399 aaKnown RBP12.81□□□□□ -0.36
LINC00239-201ENST00000556973 ARPP21Q9UBL0 812 aaPredicted RBP12.81□□□□□ -0.36
LINC00239-201ENST00000556973 SWAP70Q9UH65 585 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 MYH8P13535 1937 aa12.81□□□□□ -0.36
LINC00239-201ENST00000556973 BTBD19C9JJ37 291 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 APPP05067 770 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 MCMDC2Q4G0Z9 681 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 COL13A1Q5TAT6 717 aaPredicted RBP12.8□□□□□ -0.36
LINC00239-201ENST00000556973 CENPQQ7L2Z9 268 aaPredicted RBP12.8□□□□□ -0.36
LINC00239-201ENST00000556973 FASTKD5Q7L8L6 764 aaKnown RBP12.8□□□□□ -0.36
LINC00239-201ENST00000556973 IFNL3Q8IZI9 196 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 ZNF280CQ8ND82 737 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 WDR18Q9BV38 432 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 NACAP1Q9BZK3 213 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 PTPRFP10586 1907 aa12.8□□□□□ -0.36
LINC00239-201ENST00000556973 A0A0G2JLL6 359 aaPredicted RBP12.79□□□□□ -0.36
LINC00239-201ENST00000556973 TRIM75PA6NK02 468 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 GDF11O95390 407 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 CYP2D6P10635 497 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 SDSP20132 328 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 SHMT1P34896 483 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 JAG1P78504 1218 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 SPP2Q13103 211 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 MOGSQ13724 837 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 ABCB5Q2M3G0 1257 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 PRRT2Q7Z6L0 340 aaPredicted RBP12.79□□□□□ -0.36
LINC00239-201ENST00000556973 ANKRD23Q86SG2 305 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 FAM43AQ8N2R8 423 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 ZFYVE28Q9HCC9 887 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 CABP5Q9NP86 173 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.79□□□□□ -0.36
LINC00239-201ENST00000556973 ZBTB21Q9ULJ3 1066 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 CASP8AP2Q9UKL3 1982 aa12.79□□□□□ -0.36
LINC00239-201ENST00000556973 MINDY4BA8MYZ0 360 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 C19orf81C9J6K1 198 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 GPR25O00155 361 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 HIP1O00291 1037 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 PDHXO00330 501 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 GH2P01242 217 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 TDO2P48775 406 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 EVX2Q03828 476 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 CRHR2Q13324 411 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 TAF1CQ15572 869 aaPredicted RBP12.78□□□□□ -0.36
LINC00239-201ENST00000556973 TTC22Q5TAA0 569 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 C16orf86Q6ZW13 317 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 PROCA1Q8NCQ7 364 aaPredicted RBP12.78□□□□□ -0.36
LINC00239-201ENST00000556973 CCDC136Q96JN2 1154 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 R3HDMLQ9H3Y0 253 aa12.78□□□□□ -0.36
LINC00239-201ENST00000556973 CYP2D7A0A087X1C5 515 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 CDK8P49336 464 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 MFAP1P55081 439 aaKnown RBP12.77□□□□□ -0.37
LINC00239-201ENST00000556973 BACE1P56817 501 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 NMIQ13287 307 aaPredicted RBP12.77□□□□□ -0.37
LINC00239-201ENST00000556973 SH3D19Q5HYK7 790 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 GPAT2Q6NUI2 795 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 GADL1Q6ZQY3 521 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 CCDC129Q6ZRS4 1044 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 CCDC84Q86UT8 332 aaPredicted RBP12.77□□□□□ -0.37
LINC00239-201ENST00000556973 ZNF296Q8WUU4 475 aaPredicted RBP12.77□□□□□ -0.37
LINC00239-201ENST00000556973 DYNLL2Q96FJ2 89 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 CCDC17Q96LX7 622 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 FAM227BQ96M60 508 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 EPB41L4AQ9HCS5 686 aaPredicted RBP12.77□□□□□ -0.37
LINC00239-201ENST00000556973 SLC45A1Q9Y2W3 748 aa12.77□□□□□ -0.37
LINC00239-201ENST00000556973 A0A0D9SFI3 127 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 USP17L10C9JJH3 530 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 TLR2O60603 784 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 FKTNO75072 461 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 RAB3GAP1Q15042 981 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 SHROOM1Q2M3G4 852 aaPredicted RBP12.76□□□□□ -0.37
LINC00239-201ENST00000556973 TMEM179Q6ZVK1 233 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 SLC44A5Q8NCS7 719 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 NAPBQ9H115 298 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 MKNK2Q9HBH9 465 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 ZNF287Q9HBT7 754 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 DIAPH3Q9NSV4 1193 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 AGTPBP1Q9UPW5 1226 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 LOC285556D6RIA3 1793 aa12.76□□□□□ -0.37
LINC00239-201ENST00000556973 SMIM22K7EJ46 135 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 MPHOSPH10O00566 681 aaKnown RBP12.75□□□□□ -0.37
LINC00239-201ENST00000556973 SLC3A2P08195 630 aaKnown RBP12.75□□□□□ -0.37
LINC00239-201ENST00000556973 GSPT1P15170 499 aaKnown RBP12.75□□□□□ -0.37
LINC00239-201ENST00000556973 GUCY1A2P33402 732 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 HMGCS2P54868 508 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 PABPC4Q13310 644 aaKnown RBP eCLIP12.75□□□□□ -0.37
LINC00239-201ENST00000556973 MTMR2Q13614 643 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 ALX1Q15699 326 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 ERICH6BQ5W0A0 696 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 CWC27Q6UX04 472 aaKnown RBP12.75□□□□□ -0.37
LINC00239-201ENST00000556973 TMOD4Q9NZQ9 345 aa12.75□□□□□ -0.37
LINC00239-201ENST00000556973 ROBO3Q96MS0 1386 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 CCDC171Q6TFL3 1326 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 HSPD1P10809 573 aaKnown RBP12.74□□□□□ -0.37
LINC00239-201ENST00000556973 USP14P54578 494 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 SP3Q02447 781 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 SEPT2Q15019 361 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 VPS53Q5VIR6 699 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 USP17L2Q6R6M4 530 aa12.74□□□□□ -0.37
LINC00239-201ENST00000556973 ZNF444Q8N0Y2 327 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms