RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 CYP2D6P10635 497 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 PDE4BQ07343 736 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 PICALMQ13492 652 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 TRMT1LQ7Z2T5 733 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 SMAP1Q8IYB5 467 aaPredicted RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 KCNQ2O43526 872 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 ETF1P62495 437 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 TMTC2Q8N394 836 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 SYMPKQ92797 1274 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 CCDC47Q96A33 483 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 C8orf37Q96NL8 207 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 CRNKL1Q9BZJ0 848 aaKnown RBP13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 MAN1B1Q9UKM7 699 aa13.81□□□□□ -0.2
CCDC88C-211ENST00000556726 GSG1L2A8MUP6 293 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 RBM6P78332 1123 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 TTC38Q5R3I4 469 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 SOGA3Q5TF21 947 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 E4F1Q66K89 784 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 LRP10Q7Z4F1 713 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 GOLGA6L1Q8N7Z2 621 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 NLRP3Q96P20 1036 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 MROH5Q6ZUA9 1318 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 LOC102724428A0A0B4J2F2 783 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 MPHOSPH10O00566 681 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 CYP19A1P11511 503 aaPredicted RBP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 SIK1P57059 783 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 PTGDRQ13258 359 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 MTF1Q14872 753 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 METTL16Q86W50 562 aaKnown RBP13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 SETDB2Q96T68 719 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 DEF6Q9H4E7 631 aa13.8□□□□□ -0.2
CCDC88C-211ENST00000556726 C6orf229H3BNL8 230 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 TSPY3P0CV98 308 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 TSPY8P0CW00 308 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 ERFEQ4G0M1 354 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 PPP2R2CQ9Y2T4 447 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 UBXN1Q04323 297 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 BMS1Q14692 1282 aaKnown RBP13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 KMT5BQ4FZB7 885 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 HSP90B2PQ58FF3 399 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 AXDND1Q5T1B0 1012 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 LRRN4CLQ8ND94 238 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 SYNRGQ9UMZ2 1314 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 SOWAHDA6NJG2 315 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 AKR1B15C9JRZ8 316 aaPredicted RBP13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 GNPATO15228 680 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 MMP1P03956 469 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 LETM2Q2VYF4 491 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 SPECC1LQ69YQ0 1117 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 MAPKAPK5Q8IW41 473 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 IMPACTQ9P2X3 320 aa13.79□□□□□ -0.2
CCDC88C-211ENST00000556726 CCDC175P0C221 793 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 MTIF2P46199 727 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 PSMB7Q99436 277 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 TEX33O43247 280 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 GNAT2P19087 354 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 TFAP4Q01664 338 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 PPP2R3AQ06190 1150 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 STIM1Q13586 685 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 JAKMIP3Q5VZ66 844 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 SARM1Q6SZW1 724 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 FMR1Q06787 632 aaKnown RBP eCLIP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 NOM1Q5C9Z4 860 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 CRACR2BQ8N4Y2 399 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 IGDCC4Q8TDY8 1250 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 DYNLL2Q96FJ2 89 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 ZSCAN10Q96SZ4 725 aaPredicted RBP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 PLEKHA4Q9H4M7 779 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 SRP68Q9UHB9 627 aaKnown RBP13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 NWD1Q149M9 1564 aa13.78□□□□□ -0.2
CCDC88C-211ENST00000556726 FMNL1O95466 1100 aaPredicted RBP13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 TRIM21P19474 475 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 GPS2Q13227 327 aa13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 TOGARAM2Q6ZUX3 1019 aa13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 IL17RAQ96F46 866 aa13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 ZNHIT6Q9NWK9 470 aaKnown RBP13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 ARHGAP23Q9P227 1491 aa13.77□□□□□ -0.2
CCDC88C-211ENST00000556726 IFNAR1P17181 557 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 PRDX5P30044 214 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 CDC25BP30305 580 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 LMAN1P49257 510 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 KANK3Q6NY19 840 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 HIBADHP31937 336 aaKnown RBP13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 GYS2P54840 703 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 DIXDC1Q155Q3 683 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 ZSCAN29Q8IWY8 852 aaPredicted RBP13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 TNS3Q68CZ2 1445 aa13.77□□□□□ -0.21
CCDC88C-211ENST00000556726 RIMBP2O15034 1052 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 ARHGAP6O43182 974 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 USP17L8P0C7I0 530 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 RBM5P52756 815 aaKnown RBP eCLIP13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 IQUBQ8NA54 791 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 MLKLQ8NB16 471 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 TGFBRAP1Q8WUH2 860 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 FEZ1Q99689 392 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 KRT18P05783 430 aaKnown RBP13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 CASP14P31944 242 aa13.76□□□□□ -0.21
CCDC88C-211ENST00000556726 KRT9P35527 623 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms