RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 DIXDC1Q155Q3 683 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 PARP10Q53GL7 1025 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 FMR1NBQ8N0W7 255 aaPredicted RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 BAG1Q99933 345 aaPredicted RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 PXDNLA1KZ92 1463 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 NAPAP54920 295 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 KIAA1328Q86T90 577 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 HINFPQ9BQA5 517 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 SOS2Q07890 1332 aaPredicted RBP16.87■□□□□ 0.29
CUX1-215ENST00000556210 NOM1Q5C9Z4 860 aaKnown RBP16.87■□□□□ 0.29
CUX1-215ENST00000556210 KRBA2Q6ZNG9 492 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 CELF1Q92879 486 aaKnown RBP16.87■□□□□ 0.29
CUX1-215ENST00000556210 POLR3EQ9NVU0 708 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 PRDX5P30044 214 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 USP49Q70CQ1 688 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 DYNLL2Q96FJ2 89 aa16.87■□□□□ 0.29
CUX1-215ENST00000556210 TMEM232C9JQI7 657 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 KIF5CO60282 957 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 EPS15P42566 896 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 SAMSN1Q9NSI8 373 aaKnown RBP16.86■□□□□ 0.29
CUX1-215ENST00000556210 TNS3Q68CZ2 1445 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 BAG3O95817 575 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 MTIF2P46199 727 aaKnown RBP16.86■□□□□ 0.29
CUX1-215ENST00000556210 TTC38Q5R3I4 469 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 ZNHIT6Q9NWK9 470 aaKnown RBP16.86■□□□□ 0.29
CUX1-215ENST00000556210 MATR3P43243 847 aaKnown RBP eCLIP16.86■□□□□ 0.295e-7■■■■□ 22.9
CUX1-215ENST00000556210 TAB2Q9NYJ8 693 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 GRIN1Q05586 938 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 JAKMIP3Q5VZ66 844 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 IGSF22Q8N9C0 903 aa16.86■□□□□ 0.29
CUX1-215ENST00000556210 ZSCAN10Q96SZ4 725 aaPredicted RBP16.86■□□□□ 0.29
CUX1-215ENST00000556210 PPP1R1BQ9UD71 204 aaPredicted RBP16.86■□□□□ 0.29
CUX1-215ENST00000556210 USP17L8P0C7I0 530 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 MRFAP1L1Q96HT8 127 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 UBA5Q9GZZ9 404 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 GSG1L2A8MUP6 293 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 PTGDRQ13258 359 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 MCM6Q14566 821 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 CRACR2BQ8N4Y2 399 aaPredicted RBP16.85■□□□□ 0.29
CUX1-215ENST00000556210 TCP11L1Q9NUJ3 509 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 RAD51AP2Q09MP3 1159 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 FKBP15Q5T1M5 1219 aa16.85■□□□□ 0.29
CUX1-215ENST00000556210 ZNF622Q969S3 477 aaKnown RBP eCLIP16.84■□□□□ 0.291e-7■■□□□ 13.1
CUX1-215ENST00000556210 FUCA2Q9BTY2 467 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 GUCA1BQ9UMX6 200 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 HPS5Q9UPZ3 1129 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 ASIC1P78348 528 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 ZNF569Q5MCW4 686 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 KCNB2Q92953 911 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 CCDC102AQ96A19 550 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 LY9Q9HBG7 655 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 GPCPD1Q9NPB8 672 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 UFL1O94874 794 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 SHC4Q6S5L8 630 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 DPF2Q92785 391 aa16.84■□□□□ 0.29
CUX1-215ENST00000556210 SMARCC1Q92922 1105 aaPredicted RBP16.84■□□□□ 0.29
CUX1-215ENST00000556210 ANKRD26Q9UPS8 1709 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 A0A1W2PQ27 194 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 A0A1W2PQ64 194 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 A0A1W2PQD8 194 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 RHOXF2BP0C7M4 288 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 TRIM21P19474 475 aaKnown RBP16.83■□□□□ 0.29
CUX1-215ENST00000556210 UBXN1Q04323 297 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 IQCB1Q15051 598 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 KANK3Q6NY19 840 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 SYMPKQ92797 1274 aaKnown RBP16.83■□□□□ 0.29
CUX1-215ENST00000556210 RHOXF2Q9BQY4 288 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 UBN2Q6ZU65 1347 aa16.83■□□□□ 0.29
CUX1-215ENST00000556210 PHACTR2O75167 634 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 TNNI2P48788 182 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 HSP90B2PQ58FF3 399 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 DHX40Q8IX18 779 aaKnown RBP16.83■□□□□ 0.28
CUX1-215ENST00000556210 EPB41L4AQ9HCS5 686 aaPredicted RBP16.83■□□□□ 0.28
CUX1-215ENST00000556210 RGPD8O14715 1765 aaPredicted RBP16.83■□□□□ 0.28
CUX1-215ENST00000556210 IQUBQ8NA54 791 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 SLC44A5Q8NCS7 719 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 NRXN3Q9Y4C0 1643 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 C3P01024 1663 aa16.83■□□□□ 0.28
CUX1-215ENST00000556210 ARID5AQ03989 594 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 CAPZA3Q96KX2 299 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 PRR29P0C7W0 189 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 INF2Q27J81 1249 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 EPC1Q9H2F5 836 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 PPARDQ03181 441 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 DTHD1Q6ZMT9 781 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 PLA2G4DQ86XP0 818 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 FBXO3Q9UK99 471 aa16.82■□□□□ 0.28
CUX1-215ENST00000556210 TEX11Q8IYF3 940 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 USP17L3A6NCW0 530 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 USP17L4A6NCW7 530 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 TXKP42681 527 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 USP17L1Q7RTZ2 530 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 CWC15Q9P013 229 aaKnown RBP16.81■□□□□ 0.28
CUX1-215ENST00000556210 RTL9Q8NET4 1388 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 MMP1P03956 469 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 CNBD1Q8NA66 436 aa16.81■□□□□ 0.28
CUX1-215ENST00000556210 EVCP57679 992 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 ANKRD7Q92527 254 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 CSF1RP07333 972 aa16.8■□□□□ 0.28
CUX1-215ENST00000556210 IFNAR1P17181 557 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms