RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SLKQ9H2G2 1235 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-216ENST00000554975 PRDM6Q9NQX0 595 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 GJD2Q9UKL4 321 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 OGDHLQ9ULD0 1010 aa13.37□□□□□ -0.27
SHMT2-216ENST00000554975 TRIM75PA6NK02 468 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 GSPT1P15170 499 aaKnown RBP13.36□□□□□ -0.27
SHMT2-216ENST00000554975 FGFR2P21802 821 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 ATP8B2P98198 1209 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 GSE1Q14687 1217 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 FAM110CQ1W6H9 321 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 LRRC26Q2I0M4 334 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 TRIB2Q92519 343 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 HMX1Q9NP08 348 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-216ENST00000554975 PICK1Q9NRD5 415 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 AGTPBP1Q9UPW5 1226 aa13.36□□□□□ -0.27
SHMT2-216ENST00000554975 RFX7Q2KHR2 1363 aa13.35□□□□□ -0.27
SHMT2-216ENST00000554975 COL6A1P12109 1028 aa13.35□□□□□ -0.27
SHMT2-216ENST00000554975 MCCP23508 829 aa13.35□□□□□ -0.27
SHMT2-216ENST00000554975 RABL6Q3YEC7 729 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-216ENST00000554975 USP40Q9NVE5 1235 aa13.35□□□□□ -0.27
SHMT2-216ENST00000554975 DDTLA6NHG4 134 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-216ENST00000554975 K7ELQ4 463 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-216ENST00000554975 PEX10O60683 326 aa13.34□□□□□ -0.27
SHMT2-216ENST00000554975 HSP90AA1P07900 732 aaKnown RBP13.34□□□□□ -0.27
SHMT2-216ENST00000554975 MAP3K21Q5TCX8 1036 aa13.34□□□□□ -0.27
SHMT2-216ENST00000554975 FAM109BQ6ICB4 259 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-216ENST00000554975 LRRFIP2Q9Y608 721 aaKnown RBP13.34□□□□□ -0.27
SHMT2-216ENST00000554975 ERC2O15083 957 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 ST18O60284 1047 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 MX1P20591 662 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 PDE1AP54750 535 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 MAP3K10Q02779 954 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 GBP4Q96PP9 640 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 DDX4Q9NQI0 724 aaKnown RBP13.33□□□□□ -0.28
SHMT2-216ENST00000554975 SIPA1L1O43166 1804 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 RLFQ13129 1914 aa13.33□□□□□ -0.28
SHMT2-216ENST00000554975 FAM196BA6NMK8 535 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 PRKAR2AP13861 404 aaKnown RBP13.32□□□□□ -0.28
SHMT2-216ENST00000554975 CYP2B6P20813 491 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 WDR66Q8TBY9 1149 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 SSH3Q8TE77 659 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 CDX2Q99626 313 aaPredicted RBP13.32□□□□□ -0.28
SHMT2-216ENST00000554975 SIL1Q9H173 461 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 RAPGEFL1Q9UHV5 662 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 SALL3Q9BXA9 1300 aa13.32□□□□□ -0.28
SHMT2-216ENST00000554975 CTNND1O60716 968 aaKnown RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 IFIT1P09914 478 aaKnown RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 SDSP20132 328 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 CCND3P30281 292 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 MTX1Q13505 466 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 PUM3Q15397 648 aaKnown RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 ERC1Q8IUD2 1116 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 ZSCAN29Q8IWY8 852 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 MAFAQ8NHW3 353 aaPredicted RBP13.31□□□□□ -0.28
SHMT2-216ENST00000554975 KIF1BPQ96EK5 621 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 IDI2Q9BXS1 227 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 MYO9BQ13459 2157 aa13.31□□□□□ -0.28
SHMT2-216ENST00000554975 NCOR1O75376 2440 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 EYA2O00167 538 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 ENTPD3O75355 529 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 LDHBP07195 334 aaKnown RBP13.3□□□□□ -0.28
SHMT2-216ENST00000554975 MCM2P49736 904 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 CACNB2Q08289 660 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-216ENST00000554975 POLA2Q14181 598 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 RRP1BQ14684 758 aaKnown RBP13.3□□□□□ -0.28
SHMT2-216ENST00000554975 ZNF697Q5TEC3 545 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 LHX8Q68G74 356 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 GPATCH3Q96I76 525 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 ASCC2Q9H1I8 757 aaPredicted RBP13.3□□□□□ -0.28
SHMT2-216ENST00000554975 PNMA3Q9UL41 463 aa13.3□□□□□ -0.28
SHMT2-216ENST00000554975 ISY1Q9ULR0 285 aaKnown RBP13.3□□□□□ -0.28
SHMT2-216ENST00000554975 CDK5RAP2Q96SN8 1893 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 COL9A1P20849 921 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 RFX5P48382 616 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-216ENST00000554975 GCLCP48506 637 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-216ENST00000554975 HMGCS2P54868 508 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 ANAPC15P60006 121 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 SPP2Q13103 211 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 PICALMQ13492 652 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 CCL14Q16627 93 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 L1TD1Q5T7N2 865 aaKnown RBP13.29□□□□□ -0.28
SHMT2-216ENST00000554975 PROCA1Q8NCQ7 364 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-216ENST00000554975 MYLIPQ8WY64 445 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 GAKO14976 1311 aa13.29□□□□□ -0.28
SHMT2-216ENST00000554975 GOLGA6L22H0YM25 854 aa13.28□□□□□ -0.28
SHMT2-216ENST00000554975 TTYH1Q9H313 450 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-216ENST00000554975 TXNRD2Q9NNW7 524 aa13.28□□□□□ -0.28
SHMT2-216ENST00000554975 MORF4L1Q9UBU8 362 aa13.28□□□□□ -0.28
SHMT2-216ENST00000554975 PA2G4Q9UQ80 394 aaKnown RBP13.28□□□□□ -0.28
SHMT2-216ENST00000554975 EXOC6BQ9Y2D4 811 aa13.28□□□□□ -0.28
SHMT2-216ENST00000554975 SRGAP3O43295 1099 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 SLC5A1P13866 664 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 MCM4P33991 863 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 DDIT3P35638 169 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 PHKA1P46020 1223 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 C9orf50Q5SZB4 431 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 LPIN2Q92539 896 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 KIF2CQ99661 725 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 USP26Q9BXU7 913 aa13.27□□□□□ -0.29
SHMT2-216ENST00000554975 SEMA6BQ9H3T3 888 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms