RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 STK36Q9NRP7 1315 aa8.61□□□□□ -1.03
LIMA1-213ENST00000552720 CYP2D7A0A087X1C5 515 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 MINDY4BA8MYZ0 360 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 KIF2AO00139 706 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 WNT7AO00755 349 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 PRDM1O75626 825 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 ADKP55263 362 aaKnown RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 ETF1P62495 437 aaKnown RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 POSTNQ15063 836 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 NOM1Q5C9Z4 860 aaKnown RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 EPC1Q9H2F5 836 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 DNAJC5Q9H3Z4 198 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 CABP5Q9NP86 173 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 SAMSN1Q9NSI8 373 aaKnown RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 NFE2L3Q9Y4A8 694 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP8.6□□□□□ -1.034e-6■■■■□ 22
LIMA1-213ENST00000552720 CICQ96RK0 1608 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 A0A087X0B3 334 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 PTPREP23469 700 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 KCNJ6P48051 423 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 EVX2Q03828 476 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 CRACR2BQ8N4Y2 399 aaPredicted RBP8.6□□□□□ -1.03
LIMA1-213ENST00000552720 KRT23Q9C075 422 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 CSRNP2Q9H175 543 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 A0A1B0GUL6 1792 aa8.6□□□□□ -1.03
LIMA1-213ENST00000552720 CBFA2T2O43439 604 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 URI1O94763 535 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-213ENST00000552720 CLCN6P51797 869 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 SAFBQ15424 915 aaKnown RBP eCLIP8.59□□□□□ -1.03
LIMA1-213ENST00000552720 TOGARAM2Q6ZUX3 1019 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 TRIM22Q8IYM9 498 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 ZNF654Q8IZM8 581 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 FANCBQ8NB91 859 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 STAG1Q8WVM7 1258 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 VPS54Q9P1Q0 977 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 LRP2BPQ9P2M1 347 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 ABCF2Q9UG63 623 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 STRCQ7RTU9 1775 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 VWA3AA6NCI4 1184 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 COBLO75128 1261 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
LIMA1-213ENST00000552720 IL6STP40189 918 aaPredicted RBP8.59□□□□□ -1.03
LIMA1-213ENST00000552720 PPARAQ07869 468 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 ARHGAP29Q52LW3 1261 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 TC2NQ8N9U0 490 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 EPSTI1Q96J88 318 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 DESI2Q9BSY9 194 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 CNNM2Q9H8M5 875 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 PPP2R2CQ9Y2T4 447 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 CACNA1SQ13698 1873 aa8.59□□□□□ -1.03
LIMA1-213ENST00000552720 TNKSO95271 1327 aa8.59□□□□□ -1.04
LIMA1-213ENST00000552720 A0A0U1RQJ8 604 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ERVV-1B6SEH8 477 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ACTN4O43707 911 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 NRDCO43847 1150 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 DEXIO95424 95 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 SLFN14P0C7P3 912 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 H2AFXP16104 143 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF18P17022 549 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 CYP7A1P22680 504 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 AFMP43652 599 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 GYG1P46976 350 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 SARSP49591 514 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 CHRNDQ07001 517 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 TBX2Q13207 712 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 MORC3Q14149 939 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 MTF1Q14872 753 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 RILPL1Q5EBL4 403 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 SMYD4Q8IYR2 804 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 RGS22Q8NE09 1264 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ATRIPQ8WXE1 791 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 STAMQ92783 540 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 SMARCE1Q969G3 411 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 DHX58Q96C10 678 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 WDR24Q96S15 920 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 CARD6Q9BX69 1037 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 FOXP1Q9H334 677 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 NID2Q14112 1375 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 DISP2A7MBM2 1401 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ERICH2A1L162 156 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 TEX33O43247 280 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 PLEKHA8P1O95397 391 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 CD44P16070 742 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 EIF5P55010 431 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 STX17P56962 302 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 DYNLL1P63167 89 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 KLHL10Q6JEL2 608 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 INTS5Q6P9B9 1019 aaKnown RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ZNF771Q7L3S4 317 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 KRT222Q8N1A0 295 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 WASF1Q92558 559 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ACSBG1Q96GR2 724 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 BAG1Q99933 345 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 IRX2Q9BZI1 471 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 FAM53CQ9NYF3 392 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 PARP3Q9Y6F1 533 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 COL1A1P02452 1464 aaPredicted RBP8.58□□□□□ -1.04
LIMA1-213ENST00000552720 PNPLA7Q6ZV29 1317 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 PHLPP2Q6ZVD8 1323 aa8.58□□□□□ -1.04
LIMA1-213ENST00000552720 ADAMTS3O15072 1205 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms