RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TRIM43BA6NCK2 446 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 EYA2O00167 538 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 RHBDL3P58872 404 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 TRPV1Q8NER1 839 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 LPAR1Q92633 364 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 TRIM43Q96BQ3 446 aaPredicted RBP18.04■□□□□ 0.48
VPS29-209ENST00000551655 PDLIM7Q9NR12 457 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 SIPA1L1O43166 1804 aa18.04■□□□□ 0.48
VPS29-209ENST00000551655 DNM1LO00429 736 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 RFX5P48382 616 aaPredicted RBP18.03■□□□□ 0.48
VPS29-209ENST00000551655 MAP2K5Q13163 448 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 ANO1Q5XXA6 986 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 SLC39A5Q6ZMH5 540 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 ATG9AQ7Z3C6 839 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 CCAR1Q8IX12 1150 aaKnown RBP18.03■□□□□ 0.48
VPS29-209ENST00000551655 ADAMTS19Q8TE59 1207 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 PRKRIP1Q9H875 184 aaPredicted RBP18.03■□□□□ 0.48
VPS29-209ENST00000551655 ABCF2Q9UG63 623 aa18.03■□□□□ 0.48
VPS29-209ENST00000551655 MROH7-TTC4A0A0A0MT08 1334 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 ITGB8P26012 769 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 ADORA1P30542 326 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 HOXA7P31268 230 aaPredicted RBP18.02■□□□□ 0.48
VPS29-209ENST00000551655 CYP2C19P33261 490 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 ATP2B3Q16720 1220 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 ZNF384Q8TF68 577 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 RNPC3Q96LT9 517 aaKnown RBP18.02■□□□□ 0.48
VPS29-209ENST00000551655 SIL1Q9H173 461 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 TMOD4Q9NZQ9 345 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 DENND2AQ9ULE3 1009 aa18.02■□□□□ 0.48
VPS29-209ENST00000551655 SALL2Q9Y467 1007 aaPredicted RBP18.02■□□□□ 0.48
VPS29-209ENST00000551655 MYCNP04198 464 aaPredicted RBP18.01■□□□□ 0.47
VPS29-209ENST00000551655 BACE1P56817 501 aa18.01■□□□□ 0.47
VPS29-209ENST00000551655 MFSD14CQ5VZR4 134 aa18.01■□□□□ 0.47
VPS29-209ENST00000551655 EDC3Q96F86 508 aaKnown RBP18.01■□□□□ 0.47
VPS29-209ENST00000551655 AS3MTQ9HBK9 375 aa18.01■□□□□ 0.47
VPS29-209ENST00000551655 CWC22Q9HCG8 908 aaKnown RBP18.01■□□□□ 0.47
VPS29-209ENST00000551655 GNL3LQ9NVN8 582 aaKnown RBP18.01■□□□□ 0.47
VPS29-209ENST00000551655 REV3LO60673 3130 aa18.01■□□□□ 0.47
VPS29-209ENST00000551655 CHD9Q3L8U1 2897 aa18■□□□□ 0.47
VPS29-209ENST00000551655 DNAJB2P25686 324 aa18■□□□□ 0.47
VPS29-209ENST00000551655 CCDC184Q52MB2 194 aa18■□□□□ 0.47
VPS29-209ENST00000551655 NCBP3Q53F19 620 aaKnown RBP18■□□□□ 0.47
VPS29-209ENST00000551655 WDR78Q5VTH9 848 aa18■□□□□ 0.47
VPS29-209ENST00000551655 NPLOC4Q8TAT6 608 aa18■□□□□ 0.47
VPS29-209ENST00000551655 WDR18Q9BV38 432 aa18■□□□□ 0.47
VPS29-209ENST00000551655 TBC1D2Q9BYX2 928 aa18■□□□□ 0.47
VPS29-209ENST00000551655 CNMDO75829 334 aa17.99■□□□□ 0.47
VPS29-209ENST00000551655 RASGRF1Q13972 1273 aa17.99■□□□□ 0.47
VPS29-209ENST00000551655 FERMT2Q96AC1 680 aa17.99■□□□□ 0.47
VPS29-209ENST00000551655 FAM163AQ96GL9 167 aaPredicted RBP17.99■□□□□ 0.47
VPS29-209ENST00000551655 NECAB3Q96P71 396 aaPredicted RBP17.99■□□□□ 0.47
VPS29-209ENST00000551655 ASB2Q96Q27 587 aa17.99■□□□□ 0.47
VPS29-209ENST00000551655 UHRF1Q96T88 793 aaPredicted RBP17.99■□□□□ 0.47
VPS29-209ENST00000551655 GPR75-ASB3A0A0A6YYF3 556 aa17.98■□□□□ 0.47
VPS29-209ENST00000551655 MECOMQ03112 1051 aa17.98■□□□□ 0.47
VPS29-209ENST00000551655 CCDC102BQ68D86 513 aa17.98■□□□□ 0.47
VPS29-209ENST00000551655 ZNF576Q9H609 170 aa17.98■□□□□ 0.47
VPS29-209ENST00000551655 NCOR1O75376 2440 aa17.98■□□□□ 0.47
VPS29-209ENST00000551655 XIRP2A4UGR9 3374 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 SEMA3EO15041 775 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 MSCO60682 206 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 GDF11O95390 407 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 ADCYAP1R1P41586 468 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 ATP2B2Q01814 1243 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 SNX17Q15036 470 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 CCDC85BQ15834 202 aaPredicted RBP17.97■□□□□ 0.47
VPS29-209ENST00000551655 ZGPATQ8N5A5 531 aaKnown RBP17.97■□□□□ 0.47
VPS29-209ENST00000551655 ATXN2LQ8WWM7 1075 aaKnown RBP17.97■□□□□ 0.47
VPS29-209ENST00000551655 THEGQ9P2T0 379 aa17.97■□□□□ 0.47
VPS29-209ENST00000551655 TCF20Q9UGU0 1960 aaKnown RBP17.97■□□□□ 0.47
VPS29-209ENST00000551655 KBTBD13C9JR72 458 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 CYBAP13498 195 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 TLE2Q04725 743 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 SLF2Q8IX21 1173 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 DNAJC18Q9H819 358 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 EMILIN3Q9NT22 766 aa17.96■□□□□ 0.47
VPS29-209ENST00000551655 USP17L10C9JJH3 530 aa17.95■□□□□ 0.46
VPS29-209ENST00000551655 PTPREP23469 700 aa17.95■□□□□ 0.46
VPS29-209ENST00000551655 USP44Q9H0E7 712 aa17.95■□□□□ 0.46
VPS29-209ENST00000551655 PRDM12Q9H4Q4 367 aa17.95■□□□□ 0.46
VPS29-209ENST00000551655 PLXNA1Q9UIW2 1896 aa17.95■□□□□ 0.46
VPS29-209ENST00000551655 SLC15A5A6NIM6 579 aa17.94■□□□□ 0.46
VPS29-209ENST00000551655 NPM3O75607 178 aaKnown RBP17.94■□□□□ 0.46
VPS29-209ENST00000551655 PBX2P40425 430 aa17.94■□□□□ 0.46
VPS29-209ENST00000551655 ZYXQ15942 572 aaKnown RBP17.94■□□□□ 0.46
VPS29-209ENST00000551655 ARRDC4Q8NCT1 418 aa17.94■□□□□ 0.46
VPS29-209ENST00000551655 TIFAQ96CG3 184 aa17.94■□□□□ 0.46
VPS29-209ENST00000551655 CEP126Q9P2H0 1117 aa17.94■□□□□ 0.46
VPS29-209ENST00000551655 GRXCR1A8MXD5 290 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 C19orf81C9J6K1 198 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 IGHA2P01877 340 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 ASNSP08243 561 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 ERICH6Q7L0X2 663 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 BTBD7Q9P203 1132 aa17.93■□□□□ 0.46
VPS29-209ENST00000551655 HERC5Q9UII4 1024 aaKnown RBP17.93■□□□□ 0.46
VPS29-209ENST00000551655 CHD7Q9P2D1 2997 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 HSFX4A0A1B0GTS1 333 aaPredicted RBP17.92■□□□□ 0.46
VPS29-209ENST00000551655 HSFX3A0A1B0GWH4 333 aaPredicted RBP17.92■□□□□ 0.46
VPS29-209ENST00000551655 HOXC6P09630 235 aa17.92■□□□□ 0.46
VPS29-209ENST00000551655 MRPS5P82675 430 aaKnown RBP17.92■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms