RNA–Protein interactions for RNA: ENST00000544093.5

CHFR-222, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 3

Gene CHFR, Length 942 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-222	ENST00000544093	ZBTB21	Q9ULJ3	1066 aa		28.03	■■■□□ 2.08
CHFR-222	ENST00000544093	MX1	P20591	662 aa		28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	SLC4A8	Q2Y0W8	1093 aa		28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	SH3D19	Q5HYK7	790 aa		28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	CCDC84	Q86UT8	332 aa	Predicted RBP	28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	AMOTL1	Q8IY63	956 aa		28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	SDR42E1	Q8WUS8	393 aa		28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	RWDD1	Q9H446	243 aa	Predicted RBP	28.02	■■■□□ 2.08
CHFR-222	ENST00000544093	C19orf81	C9J6K1	198 aa		28.01	■■■□□ 2.07
CHFR-222	ENST00000544093	ANKRD45	Q5TZF3	282 aa		28.01	■■■□□ 2.07
CHFR-222	ENST00000544093	PTPN22	Q9Y2R2	807 aa		28.01	■■■□□ 2.07
CHFR-222	ENST00000544093	GDF11	O95390	407 aa		28	■■■□□ 2.07
CHFR-222	ENST00000544093	PLCD1	P51178	756 aa		28	■■■□□ 2.07
CHFR-222	ENST00000544093	BACE1	P56817	501 aa		28	■■■□□ 2.07
CHFR-222	ENST00000544093	CERKL	Q49MI3	558 aa	Predicted RBP	28	■■■□□ 2.07
CHFR-222	ENST00000544093	TSHZ3	Q63HK5	1081 aa		28	■■■□□ 2.07
CHFR-222	ENST00000544093	CPA4	Q9UI42	421 aa		28	■■■□□ 2.07
CHFR-222	ENST00000544093	CYP2C8	P10632	490 aa		27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	HMGCS2	P54868	508 aa		27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	PRMT2	P55345	433 aa		27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	SMCR8	Q8TEV9	937 aa	Predicted RBP	27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	CABP5	Q9NP86	173 aa		27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	TMOD4	Q9NZQ9	345 aa		27.99	■■■□□ 2.07
CHFR-222	ENST00000544093	USP17L10	C9JJH3	530 aa		27.98	■■■□□ 2.07
CHFR-222	ENST00000544093	GABPA	Q06546	454 aa		27.98	■■■□□ 2.07
CHFR-222	ENST00000544093	PI4K2B	Q8TCG2	481 aa		27.98	■■■□□ 2.07
CHFR-222	ENST00000544093	APPBP2	Q92624	585 aa		27.98	■■■□□ 2.07
CHFR-222	ENST00000544093	SWAP70	Q9UH65	585 aa		27.98	■■■□□ 2.07
CHFR-222	ENST00000544093	HTT	P42858	3142 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	RNF113A	O15541	343 aa	Known RBP	27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	GH2	P01242	217 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	BCR	P11274	1271 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	RGS19	P49795	217 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	MTMR2	Q13614	643 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	ABCB5	Q2M3G0	1257 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	PUS7L	Q9H0K6	701 aa	Known RBP	27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	SLC4A4	Q9Y6R1	1079 aa		27.97	■■■□□ 2.07
CHFR-222	ENST00000544093	BAZ2A	Q9UIF9	1905 aa	Known RBP	27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	OSBP	P22059	807 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	SHMT1	P34896	483 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	JAG1	P78504	1218 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	SLFNL1	Q499Z3	407 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	TREML2	Q5T2D2	321 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	MYH8	P13535	1937 aa		27.96	■■■□□ 2.07
CHFR-222	ENST00000544093	SALL3	Q9BXA9	1300 aa		27.95	■■■□□ 2.07
CHFR-222	ENST00000544093	HOXD10	P28358	340 aa		27.95	■■■□□ 2.06
CHFR-222	ENST00000544093	SUPT16H	Q9Y5B9	1047 aa	Known RBP	27.95	■■■□□ 2.06
CHFR-222	ENST00000544093	PRKAB2	O43741	272 aa		27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	GNAT2	P19087	354 aa		27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	GCLC	P48506	637 aa	Predicted RBP	27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	OTUD7A	Q8TE49	926 aa	Predicted RBP	27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	STRBP	Q96SI9	672 aa	Known RBP	27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	STAP2	Q9UGK3	403 aa		27.94	■■■□□ 2.06
CHFR-222	ENST00000544093	CHGB	P05060	677 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	PSMC4	P43686	418 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	CAP1	Q01518	475 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	GIMAP6	Q6P9H5	292 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	USP17L2	Q6R6M4	530 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	SMC5	Q8IY18	1101 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	EXOC6	Q8TAG9	804 aa		27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	ARPP21	Q9UBL0	812 aa	Predicted RBP	27.93	■■■□□ 2.06
CHFR-222	ENST00000544093	HOXA7	P31268	230 aa	Predicted RBP	27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	USP14	P54578	494 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	FCGRT	P55899	365 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	RAB3GAP1	Q15042	981 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	C12orf60	Q5U649	245 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	FSD1	Q9BTV5	496 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	ARHGAP39	Q9C0H5	1083 aa		27.92	■■■□□ 2.06
CHFR-222	ENST00000544093	MGAM	O43451	1857 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	FMNL1	O95466	1100 aa	Predicted RBP	27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	FAM110C	Q1W6H9	321 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	SHROOM1	Q2M3G4	852 aa	Predicted RBP	27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	NBPF11	Q86T75	865 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	TICAM2	Q86XR7	235 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	ARMC5	Q96C12	935 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	FEZ1	Q99689	392 aa		27.91	■■■□□ 2.06
CHFR-222	ENST00000544093	USP17L12	C9JPN9	530 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	USP17L21	D6R901	530 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	IRX3	P78415	501 aa	Predicted RBP	27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	OSBP2	Q969R2	916 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	TRIM47	Q96LD4	638 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	C12orf42	Q96LP6	360 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	ASCC2	Q9H1I8	757 aa	Predicted RBP	27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	ZSWIM8	A7E2V4	1837 aa		27.9	■■■□□ 2.06
CHFR-222	ENST00000544093	CYP2D6	P10635	497 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	PDE1A	P54750	535 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	SLC9C1	Q4G0N8	1177 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	TMEM179	Q6ZVK1	233 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	GTF3C2	Q8WUA4	911 aa	Predicted RBP	27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	EVI5L	Q96CN4	794 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	CCDC17	Q96LX7	622 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	KIAA1683	Q9H0B3	1180 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	SRRD	Q9UH36	339 aa		27.89	■■■□□ 2.06
CHFR-222	ENST00000544093	MPHOSPH10	O00566	681 aa	Known RBP	27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	GPAA1	O43292	621 aa		27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	MLLT1	Q03111	559 aa	Predicted RBP	27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	SBK1	Q52WX2	424 aa		27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	CTR9	Q6PD62	1173 aa		27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	C16orf86	Q6ZW13	317 aa		27.88	■■■□□ 2.05
CHFR-222	ENST00000544093	PTCH2	Q9Y6C5	1203 aa		27.88	■■■□□ 2.05

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms