RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 OTUD7AQ8TE49 926 aaPredicted RBP17.13■□□□□ 0.33
CHD4-210ENST00000544040 ZC3H12CQ9C0D7 883 aaKnown RBP17.13■□□□□ 0.33
CHD4-210ENST00000544040 HELLSQ9NRZ9 838 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 NFATC2IPQ8NCF5 419 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 SMIM24O75264 130 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 PLCG2P16885 1265 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 TTC38Q5R3I4 469 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 PHKBQ93100 1093 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 HINFPQ9BQA5 517 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 PPFIA1Q13136 1202 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 TTC19Q6DKK2 380 aaPredicted RBP17.13■□□□□ 0.33
CHD4-210ENST00000544040 FAM207AQ9NSI2 230 aaPredicted RBP17.13■□□□□ 0.33
CHD4-210ENST00000544040 NFE2L3Q9Y4A8 694 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 GCNT3O95395 438 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 PNOCQ13519 176 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 TMTC1Q8IUR5 882 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 MYCT1Q8N699 235 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 ARHGEF35A5YM69 484 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 CTNNA1P35221 906 aaKnown RBP17.13■□□□□ 0.33
CHD4-210ENST00000544040 ZSCAN26Q16670 478 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 SFMBT2Q5VUG0 894 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 SNX14Q9Y5W7 946 aa17.13■□□□□ 0.33
CHD4-210ENST00000544040 PPP1R2P41236 205 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 NAP1L4Q99733 375 aaKnown RBP17.12■□□□□ 0.33
CHD4-210ENST00000544040 PRDM1O75626 825 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 CTDSPL2Q05D32 466 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 MTMR3Q13615 1198 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 POSTNQ15063 836 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 AKAP4Q5JQC9 854 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 RRAGAQ7L523 313 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 RSPH3Q86UC2 560 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 CTAGE3PQ8IX95 158 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.12■□□□□ 0.33
CHD4-210ENST00000544040 hCG_1642624A0A1W2PR95 340 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 RGS16O15492 202 aaPredicted RBP17.12■□□□□ 0.33
CHD4-210ENST00000544040 SNX29Q8TEQ0 813 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 NLRC4Q9NPP4 1024 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 IMPACTQ9P2X3 320 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 COG7P83436 770 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 HERC4Q5GLZ8 1057 aaPredicted RBP17.12■□□□□ 0.33
CHD4-210ENST00000544040 CDC37L1Q7L3B6 337 aa17.12■□□□□ 0.33
CHD4-210ENST00000544040 TSPYL2Q9H2G4 693 aaPredicted RBP17.12■□□□□ 0.33
CHD4-210ENST00000544040 LGSNQ5TDP6 509 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 MAP3K1Q13233 1512 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 CUTAO60888 179 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 HAUS3Q68CZ6 603 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 CCDC13Q8IYE1 715 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 RDH13Q8NBN7 331 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 KCNJ14Q9UNX9 436 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 USH1CQ9Y6N9 552 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 PEX19P40855 299 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 TIMM10P62072 90 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 IDI1Q13907 227 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 DIS3L2Q8IYB7 885 aaKnown RBP17.11■□□□□ 0.33
CHD4-210ENST00000544040 UHMK1Q8TAS1 419 aaKnown RBP17.11■□□□□ 0.33
CHD4-210ENST00000544040 TEX11Q8IYF3 940 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 USH1GQ495M9 461 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 FAM227BQ96M60 508 aa17.11■□□□□ 0.33
CHD4-210ENST00000544040 IFIH1Q9BYX4 1025 aaKnown RBP17.11■□□□□ 0.33
CHD4-210ENST00000544040 MRPL44Q9H9J2 332 aaKnown RBP17.11■□□□□ 0.33
CHD4-210ENST00000544040 ARHGAP6O43182 974 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 EIF4A2Q14240 407 aaKnown RBP17.1■□□□□ 0.33
CHD4-210ENST00000544040 SYCE1Q8N0S2 351 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 SOS1Q07889 1333 aaPredicted RBP17.1■□□□□ 0.33
CHD4-210ENST00000544040 RAD50Q92878 1312 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 RALGAPBQ86X10 1494 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 A6NNZ2 444 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 RNF40O75150 1001 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 CD19P15391 556 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 WHAMMP3Q1A5X7 153 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 TUBB8Q3ZCM7 444 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 MLKLQ8NB16 471 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 LINS1Q8NG48 757 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 NYXQ9GZU5 481 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 BCL2L12Q9HB09 334 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 TAB3Q8N5C8 712 aaPredicted RBP17.1■□□□□ 0.33
CHD4-210ENST00000544040 EFCC1Q9HA90 598 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 EXOC7Q9UPT5 735 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 EXOC3O60645 756 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 ADAT2Q7Z6V5 191 aaKnown RBP17.1■□□□□ 0.33
CHD4-210ENST00000544040 PALM2Q8IXS6 379 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 DESI2Q9BSY9 194 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 BUB1O43683 1085 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 SRGAP1Q7Z6B7 1085 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 RAB3IPQ96QF0 476 aaPredicted RBP17.1■□□□□ 0.33
CHD4-210ENST00000544040 NDUFB9Q9Y6M9 179 aa17.1■□□□□ 0.33
CHD4-210ENST00000544040 ABCB4P21439 1286 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 CXorf38Q8TB03 319 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 KLHDC4Q8TBB5 520 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 PRPF31Q8WWY3 499 aaKnown RBP17.09■□□□□ 0.33
CHD4-210ENST00000544040 KRT12Q99456 494 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 LSM14BQ9BX40 385 aaKnown RBP17.09■□□□□ 0.33
CHD4-210ENST00000544040 ZBTB40Q9NUA8 1239 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 TROVE2P10155 538 aaKnown RBP eCLIP17.09■□□□□ 0.33
CHD4-210ENST00000544040 LIG3P49916 1009 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 C2CD5Q86YS7 1000 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 U2AF1L4Q8WU68 220 aaKnown RBP17.09■□□□□ 0.33
CHD4-210ENST00000544040 WDR46O15213 610 aaKnown RBP17.09■□□□□ 0.33
CHD4-210ENST00000544040 SLC12A2P55011 1212 aa17.09■□□□□ 0.33
CHD4-210ENST00000544040 RPS6KA2Q15349 733 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms