RNA–Protein interactions for RNA: ENST00000541341.5

CHFR-219, Transcript of checkpoint with forkhead and ring finger domains, humanhuman

TSL 3

Gene CHFR, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHFR-219ENST00000541341 COA1Q9GZY4 146 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 GDPD2Q9HCC8 539 aa12.04□□□□□ -0.48
CHFR-219ENST00000541341 V9GYY5 206 aaPredicted RBP12.04□□□□□ -0.48
CHFR-219ENST00000541341 ANKRD18BA2A2Z9 1011 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 CDK11BP21127 795 aaKnown RBP12.03□□□□□ -0.48
CHFR-219ENST00000541341 FKBP1BP68106 108 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 SLC20A2Q08357 652 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 NCBP1Q09161 790 aaKnown RBP12.03□□□□□ -0.48
CHFR-219ENST00000541341 IFIT5Q13325 482 aaKnown RBP12.03□□□□□ -0.48
CHFR-219ENST00000541341 CCDC57Q2TAC2 916 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 ANO6Q4KMQ2 910 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 STRIP1Q5VSL9 837 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 CWC27Q6UX04 472 aaKnown RBP12.03□□□□□ -0.48
CHFR-219ENST00000541341 BICD2Q8TD16 824 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 ZNF594Q96JF6 807 aaPredicted RBP12.03□□□□□ -0.48
CHFR-219ENST00000541341 CLMNQ96JQ2 1002 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 BPIFA3Q9BQP9 254 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 KCNF1Q9H3M0 494 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 CBX8Q9HC52 389 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 LEMD3Q9Y2U8 911 aa12.03□□□□□ -0.48
CHFR-219ENST00000541341 SSC5DA1L4H1 1573 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 H3BQV1 296 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 GPR25O00155 361 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 KINO60870 393 aaKnown RBP12.02□□□□□ -0.49
CHFR-219ENST00000541341 CIAO1O76071 339 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 PTGS1P23219 599 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 LRRFIP1Q32MZ4 808 aaKnown RBP12.02□□□□□ -0.49
CHFR-219ENST00000541341 LRRC8AQ8IWT6 810 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 CERS5Q8N5B7 392 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 SPC24Q8NBT2 197 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 TIGD1Q96MW7 591 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 NOL10Q9BSC4 688 aaKnown RBP12.02□□□□□ -0.49
CHFR-219ENST00000541341 ANKRD2Q9GZV1 360 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 VEZTQ9HBM0 779 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 CD209Q9NNX6 404 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 PYCARDQ9ULZ3 195 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 U3KPZ7 1027 aaPredicted RBP12.02□□□□□ -0.49
CHFR-219ENST00000541341 MYO3BQ8WXR4 1341 aa12.02□□□□□ -0.49
CHFR-219ENST00000541341 CBFA2T2O43439 604 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 RPS6KB1P23443 525 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 RBM5P52756 815 aaKnown RBP eCLIP12.01□□□□□ -0.49
CHFR-219ENST00000541341 G3BP1Q13283 466 aaKnown RBP eCLIP12.01□□□□□ -0.49
CHFR-219ENST00000541341 DLGAP5Q15398 846 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 ATP2B3Q16720 1220 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 JAKMIP3Q5VZ66 844 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 CREB3L3Q68CJ9 461 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 ARMC9Q7Z3E5 817 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 FCHSD1Q86WN1 690 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 APOBEC3FQ8IUX4 373 aaKnown RBP12.01□□□□□ -0.49
CHFR-219ENST00000541341 REM2Q8IYK8 340 aaPredicted RBP12.01□□□□□ -0.49
CHFR-219ENST00000541341 LEO1Q8WVC0 666 aaPredicted RBP12.01□□□□□ -0.49
CHFR-219ENST00000541341 DNAJC2Q99543 621 aaKnown RBP12.01□□□□□ -0.49
CHFR-219ENST00000541341 DACT1Q9NYF0 836 aa12.01□□□□□ -0.49
CHFR-219ENST00000541341 MYH15Q9Y2K3 1946 aa12□□□□□ -0.49
CHFR-219ENST00000541341 TM4SF4P48230 202 aa12□□□□□ -0.49
CHFR-219ENST00000541341 TERF2Q15554 542 aa12□□□□□ -0.49
CHFR-219ENST00000541341 CFAP100Q494V2 611 aa12□□□□□ -0.49
CHFR-219ENST00000541341 TTC6Q86TZ1 520 aa12□□□□□ -0.49
CHFR-219ENST00000541341 OSBPL5Q9H0X9 879 aaPredicted RBP12□□□□□ -0.49
CHFR-219ENST00000541341 DEFB129Q9H1M3 183 aa12□□□□□ -0.49
CHFR-219ENST00000541341 CWC15Q9P013 229 aaKnown RBP12□□□□□ -0.49
CHFR-219ENST00000541341 RBM8AQ9Y5S9 174 aaKnown RBP12□□□□□ -0.49
CHFR-219ENST00000541341 EYA2O00167 538 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 DHX16O60231 1041 aaKnown RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 FKTNO75072 461 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 TUBBP07437 444 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 SKILP12757 684 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 U2AF2P26368 475 aaKnown RBP eCLIP11.99□□□□□ -0.49
CHFR-219ENST00000541341 SREBF2Q12772 1141 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 TUBB2AQ13885 445 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 NBPF12Q5TAG4 269 aaPredicted RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 SPRYD7Q5W111 196 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 NYAP1Q6ZVC0 841 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 ATG9AQ7Z3C6 839 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 KLHDC4Q8TBB5 520 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 SLC10A4Q96EP9 437 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 DDX11Q96FC9 970 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 ZBED3Q96IU2 234 aaPredicted RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 PRMT6Q96LA8 375 aaPredicted RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 C16orf45Q96MC5 204 aaPredicted RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 TUBB2BQ9BVA1 445 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 IL1RAPL2Q9NP60 686 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 RCOR1Q9UKL0 485 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 ZHX1Q9UKY1 873 aaPredicted RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 PA2G4Q9UQ80 394 aaKnown RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 RIPOR2Q9Y4F9 1068 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 RBBP6Q7Z6E9 1792 aaKnown RBP11.99□□□□□ -0.49
CHFR-219ENST00000541341 HTTP42858 3142 aa11.99□□□□□ -0.49
CHFR-219ENST00000541341 MROH5Q6ZUA9 1318 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 IRS2Q9Y4H2 1338 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 A0A1W2PQ27 194 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 A0A1W2PQ64 194 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 A0A1W2PQD8 194 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 ZSCAN12O43309 604 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 IL15P40933 162 aaPredicted RBP11.98□□□□□ -0.49
CHFR-219ENST00000541341 FAM160A1Q05DH4 1040 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 ME3Q16798 604 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 FOXD4L6Q3SYB3 417 aaPredicted RBP11.98□□□□□ -0.49
CHFR-219ENST00000541341 TAF7LQ5H9L4 462 aa11.98□□□□□ -0.49
CHFR-219ENST00000541341 FOXD4L3Q6VB84 417 aaPredicted RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms