RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PPP4CP60510 307 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 ST5P78524 1137 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 PKN1Q16512 942 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 IFIT1BQ5T764 474 aaKnown RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 JMYQ8N9B5 988 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 ANO10Q9NW15 660 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 PRPF3O43395 683 aaKnown RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 TOB1P50616 345 aaPredicted RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 RESP18Q5W5W9 173 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 SHC4Q6S5L8 630 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 SARM1Q6SZW1 724 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 ILDR2Q71H61 639 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 DZIP1Q86YF9 867 aaKnown RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 DIS3L2Q8IYB7 885 aaKnown RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 NUP133Q8WUM0 1156 aa15.92■□□□□ 0.14
RTN3-210ENST00000540798 RPGRQ92834 1020 aaKnown RBP15.92■□□□□ 0.14
RTN3-210ENST00000540798 EP400Q96L91 3159 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 BTBD18B2RXH4 712 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 ZNF202O95125 648 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 LDHBP07195 334 aaKnown RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 IL1R1P14778 569 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 CATIPQ7Z7H3 387 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 RBM17Q96I25 401 aaKnown RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 KIAA1468Q9P260 1216 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 POLRMTO00411 1230 aaKnown RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 PRDM1O75626 825 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 TPM3P06753 285 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 ATP2B4P23634 1241 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 DDR1Q08345 913 aa15.91■□□□□ 0.14
RTN3-210ENST00000540798 GNL2Q13823 731 aaKnown RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 CMTR1Q8N1G2 835 aaKnown RBP15.91■□□□□ 0.14
RTN3-210ENST00000540798 CUTAO60888 179 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 CYP2D6P10635 497 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 GSTO1P78417 241 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 SAFBQ15424 915 aaKnown RBP eCLIP15.9■□□□□ 0.14
RTN3-210ENST00000540798 DHX40Q8IX18 779 aaKnown RBP15.9■□□□□ 0.14
RTN3-210ENST00000540798 KCNJ14Q9UNX9 436 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 SLC3A2P08195 630 aaKnown RBP15.9■□□□□ 0.14
RTN3-210ENST00000540798 MARCKSP29966 332 aaPredicted RBP15.9■□□□□ 0.14
RTN3-210ENST00000540798 ZNF75DP51815 510 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 GRIK5Q16478 980 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 C12orf60Q5U649 245 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 KRT27Q7Z3Y8 459 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 BPIFA3Q9BQP9 254 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 CDC25BP30305 580 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 RILPL1Q5EBL4 403 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 TMTC3Q6ZXV5 915 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 CRAMP1Q96RY5 1269 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 PHF20Q9BVI0 1012 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 JAG2Q9Y219 1238 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 QSER1Q2KHR3 1735 aa15.9■□□□□ 0.14
RTN3-210ENST00000540798 BBOX1O75936 387 aa15.89■□□□□ 0.13
RTN3-210ENST00000540798 PROM2Q8N271 834 aa15.89■□□□□ 0.13
RTN3-210ENST00000540798 PDE4BQ07343 736 aa15.89■□□□□ 0.13
RTN3-210ENST00000540798 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.89■□□□□ 0.13
RTN3-210ENST00000540798 ELOA2Q8IYF1 753 aaPredicted RBP15.89■□□□□ 0.13
RTN3-210ENST00000540798 ANKS1AQ92625 1134 aa15.89■□□□□ 0.13
RTN3-210ENST00000540798 SDF4Q9BRK5 362 aa15.89■□□□□ 0.13
RTN3-210ENST00000540798 CNTNAP5Q8WYK1 1306 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 PLEKHA8P1O95397 391 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 RBM6P78332 1123 aaKnown RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 KIAA2012Q0VF49 1180 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 RCSD1Q6JBY9 416 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 SH3RF3Q8TEJ3 882 aaPredicted RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 PIBF1Q8WXW3 757 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 RTFDC1Q9BY42 306 aaPredicted RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 KCNF1Q9H3M0 494 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 CD209Q9NNX6 404 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 PLCB2Q00722 1185 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 USP17L8P0C7I0 530 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 HMGB2P26583 209 aaKnown RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 CERS3Q8IU89 383 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 CCDC82Q8N4S0 544 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 GPR101Q96P66 508 aaPredicted RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 TTC12Q9H892 705 aaPredicted RBP15.88■□□□□ 0.13
RTN3-210ENST00000540798 TUBE1Q9UJT0 475 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 GGA1Q9UJY5 639 aa15.88■□□□□ 0.13
RTN3-210ENST00000540798 GOLGA6L6A8MZA4 724 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 UFL1O94874 794 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 TRIM37O94972 964 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 CEP57L1Q8IYX8 460 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 OXER1Q8TDS5 423 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 ZNF830Q96NB3 372 aaPredicted RBP15.87■□□□□ 0.13
RTN3-210ENST00000540798 MCM9Q9NXL9 1143 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 FBXO2Q9UK22 296 aaPredicted RBP15.87■□□□□ 0.13
RTN3-210ENST00000540798 NMT2O60551 498 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 SYKP43405 635 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 NR5A1Q13285 461 aa15.87■□□□□ 0.13
RTN3-210ENST00000540798 KRI1Q8N9T8 703 aaKnown RBP15.87■□□□□ 0.13
RTN3-210ENST00000540798 ERCC4Q92889 916 aaPredicted RBP15.87■□□□□ 0.13
RTN3-210ENST00000540798 BAG3O95817 575 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 LDHCP07864 332 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 PTPREP23469 700 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 NPY5RQ15761 445 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 FAM47AQ5JRC9 791 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 TMC4Q7Z404 712 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 ZNF579Q8NAF0 562 aaKnown RBP15.86■□□□□ 0.13
RTN3-210ENST00000540798 TNFRSF25Q93038 417 aa15.86■□□□□ 0.13
RTN3-210ENST00000540798 CLIC6Q96NY7 704 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms