RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 FRAT1Q92837 279 aaPredicted RBP16.65■□□□□ 0.26
SS18-204ENST00000539244 DBNDD2Q9BQY9 259 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 SNRKQ9NRH2 765 aa16.65■□□□□ 0.26
SS18-204ENST00000539244 IRX3P78415 501 aaPredicted RBP16.64■□□□□ 0.25
SS18-204ENST00000539244 ATP8B2P98198 1209 aa16.64■□□□□ 0.25
SS18-204ENST00000539244 MAP3K21Q5TCX8 1036 aa16.64■□□□□ 0.25
SS18-204ENST00000539244 HMX1Q9NP08 348 aaPredicted RBP16.64■□□□□ 0.25
SS18-204ENST00000539244 TMOD4Q9NZQ9 345 aa16.64■□□□□ 0.25
SS18-204ENST00000539244 USP17L10C9JJH3 530 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 XRCC5P13010 732 aaKnown RBP16.63■□□□□ 0.25
SS18-204ENST00000539244 MNX1P50219 401 aaPredicted RBP16.63■□□□□ 0.25
SS18-204ENST00000539244 HERVK_113P62684 666 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 MAPKAPK5Q8IW41 473 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 DIS3LQ8TF46 1054 aaKnown RBP16.63■□□□□ 0.25
SS18-204ENST00000539244 SOCS4Q8WXH5 440 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 TRIB2Q92519 343 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 P2RX7Q99572 595 aaKnown RBP16.63■□□□□ 0.25
SS18-204ENST00000539244 ZBTB21Q9ULJ3 1066 aa16.63■□□□□ 0.25
SS18-204ENST00000539244 NOP58Q9Y2X3 529 aaKnown RBP16.63■□□□□ 0.25
SS18-204ENST00000539244 ZAP70P43403 619 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 TRIM32Q13049 653 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 CRACR2BQ8N4Y2 399 aaPredicted RBP16.62■□□□□ 0.25
SS18-204ENST00000539244 GPRC5AQ8NFJ5 357 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 GTF3C2Q8WUA4 911 aaPredicted RBP16.62■□□□□ 0.25
SS18-204ENST00000539244 TXNRD2Q9NNW7 524 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 DBNLQ9UJU6 430 aaKnown RBP16.62■□□□□ 0.25
SS18-204ENST00000539244 OGDHLQ9ULD0 1010 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 PALD1Q9ULE6 856 aa16.62■□□□□ 0.25
SS18-204ENST00000539244 DDX60LQ5H9U9 1706 aaKnown RBP16.62■□□□□ 0.25
SS18-204ENST00000539244 MYH1P12882 1939 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 SURF6O75683 361 aaKnown RBP16.61■□□□□ 0.25
SS18-204ENST00000539244 GDF11O95390 407 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 MAPK4P31152 587 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 BMP8BP34820 402 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 OS9Q13438 667 aaPredicted RBP16.61■□□□□ 0.25
SS18-204ENST00000539244 SHROOM1Q2M3G4 852 aaPredicted RBP16.61■□□□□ 0.25
SS18-204ENST00000539244 CERS3Q8IU89 383 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 TRMT44Q8IYL2 757 aaKnown RBP16.61■□□□□ 0.25
SS18-204ENST00000539244 NUDT12Q9BQG2 462 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 TRIM34Q9BYJ4 488 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 NBPF3Q9H094 633 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 PIH1D3Q9NQM4 214 aaKnown RBP16.61■□□□□ 0.25
SS18-204ENST00000539244 RBPJLQ9UBG7 517 aa16.61■□□□□ 0.25
SS18-204ENST00000539244 HLA-DOAP06340 250 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 CYP2B6P20813 491 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 TMED8Q6PL24 325 aaPredicted RBP16.6■□□□□ 0.25
SS18-204ENST00000539244 USP6NLQ92738 828 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 C12orf42Q96LP6 360 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 GDF15Q99988 308 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 EMILIN3Q9NT22 766 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 STAP2Q9UGK3 403 aa16.6■□□□□ 0.25
SS18-204ENST00000539244 PRKAR2AP13861 404 aaKnown RBP16.59■□□□□ 0.25
SS18-204ENST00000539244 ERVK-9P63128 1117 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 ERVK-24P63145 666 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 TATDN1Q6P1N9 297 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 USP17L2Q6R6M4 530 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 POTEEQ6S8J3 1075 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 EHD4Q9H223 541 aa16.59■□□□□ 0.25
SS18-204ENST00000539244 SOX1O00570 391 aaPredicted RBP16.58■□□□□ 0.24
SS18-204ENST00000539244 PEX10O60683 326 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 CYP7A1P22680 504 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 DYNLL1P63167 89 aaKnown RBP16.58■□□□□ 0.24
SS18-204ENST00000539244 Q3C1V9 767 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 MORN1Q5T089 497 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 EAF2Q96CJ1 260 aaPredicted RBP16.58■□□□□ 0.24
SS18-204ENST00000539244 PORCNQ9H237 461 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 C11orf49Q9H6J7 331 aa16.58■□□□□ 0.24
SS18-204ENST00000539244 TLR7Q9NYK1 1049 aaKnown RBP16.58■□□□□ 0.24
SS18-204ENST00000539244 SAP30BPQ9UHR5 308 aaKnown RBP16.58■□□□□ 0.24
SS18-204ENST00000539244 GH2P01242 217 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 PDE3AQ14432 1141 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 GPR142Q7Z601 462 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 C7orf61Q8IZ16 206 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 C1orf115Q9H7X2 142 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 SERPINB13Q9UIV8 391 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 COL6A3P12111 3177 aa16.57■□□□□ 0.24
SS18-204ENST00000539244 PFASO15067 1338 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 IDH1O75874 414 aaKnown RBP16.56■□□□□ 0.24
SS18-204ENST00000539244 COL6A1P12109 1028 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 ZKSCAN1P17029 563 aaPredicted RBP16.56■□□□□ 0.24
SS18-204ENST00000539244 RGS2P41220 211 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 CACNB2Q08289 660 aaPredicted RBP16.56■□□□□ 0.24
SS18-204ENST00000539244 GPR153Q6NV75 609 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 LBX2Q6XYB7 198 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 APBA2Q99767 749 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 CCDC8Q9H0W5 538 aaPredicted RBP16.56■□□□□ 0.24
SS18-204ENST00000539244 RABGAP1Q9Y3P9 1069 aa16.56■□□□□ 0.24
SS18-204ENST00000539244 USP17L15C9J2P7 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L13C9JLJ4 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L11C9JVI0 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L18D6R9N7 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L22D6RA61 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L17D6RBQ6 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L19D6RCP7 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L20D6RJB6 530 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 RLBP1P12271 317 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP5P45974 858 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP14P54578 494 aa16.55■□□□□ 0.24
SS18-204ENST00000539244 USP17L24Q0WX57 530 aa16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms