RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CCT6AP40227 531 aaKnown RBP11.85□□□□□ -0.51
CLIP1-209ENST00000537178 ARHGAP25P42331 645 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 SATB1Q01826 763 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 PDE4DQ08499 809 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 LETM2Q2VYF4 491 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 RUFY3Q7L099 469 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 PHLDB2Q86SQ0 1253 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 GOLGA6AQ9NYA3 693 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 ACEP12821 1306 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 HHATQ5VTY9 493 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 SRGAP1Q7Z6B7 1085 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 JDP2Q8WYK2 163 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 CLEC11AQ9Y240 323 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.85□□□□□ -0.51
CLIP1-209ENST00000537178 DAPK3O43293 454 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 TRPC3Q13507 836 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 CCDC38Q502W7 563 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 MAGEB6Q8N7X4 407 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 CABS1Q96KC9 395 aa11.85□□□□□ -0.51
CLIP1-209ENST00000537178 NSFL1CQ9UNZ2 370 aaKnown RBP11.85□□□□□ -0.51
CLIP1-209ENST00000537178 TTC36A6NLP5 189 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 SP4Q02446 784 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 AKAP4Q5JQC9 854 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 ARHGEF2Q92974 986 aaKnown RBP11.84□□□□□ -0.51
CLIP1-209ENST00000537178 DCTPP1Q9H773 170 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 AFG3L2Q9Y4W6 797 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 AK9Q5TCS8 1911 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 IDI1Q13907 227 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 CHRNA2Q15822 529 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 ASIC2Q16515 512 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 CHST3Q7LGC8 479 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 CCDC125Q86Z20 511 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 MIGA1Q8NAN2 632 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 ASIC3Q9UHC3 531 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 BCAP29Q9UHQ4 241 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 A0A1B0GVL5 298 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 ZNF131P52739 623 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 ZNF853P0CG23 659 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 HARSP12081 509 aaKnown RBP11.84□□□□□ -0.51
CLIP1-209ENST00000537178 CNGA1P29973 690 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 BRDTQ58F21 947 aaPredicted RBP11.84□□□□□ -0.51
CLIP1-209ENST00000537178 MRPL50Q8N5N7 158 aaKnown RBP11.84□□□□□ -0.51
CLIP1-209ENST00000537178 STK24Q9Y6E0 443 aa11.84□□□□□ -0.51
CLIP1-209ENST00000537178 I3L4J1 428 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 KRT9P35527 623 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 PAK2Q13177 524 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 ZNF174Q15697 407 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 CSGALNACT2Q8N6G5 542 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 VPS16Q9H269 839 aa11.83□□□□□ -0.51
CLIP1-209ENST00000537178 PA2G4Q9UQ80 394 aaKnown RBP11.83□□□□□ -0.51
CLIP1-209ENST00000537178 CALUO43852 315 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 DEXIO95424 95 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 SH2D4BQ5SQS7 431 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 TMTC1Q8IUR5 882 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 TMEM87BQ96K49 555 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 ZRANB1Q9UGI0 708 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 KRBA2Q6ZNG9 492 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 MLKLQ8NB16 471 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 SECISBP2LQ93073 1101 aaKnown RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 CCDC169A6NNP5 214 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 BUB1BO60566 1050 aaPredicted RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 VCX3AQ9NNX9 186 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 HAUS2Q9NVX0 235 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 CTNND2Q9UQB3 1225 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 CLNS1AP54105 237 aaKnown RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 PPFIA1Q13136 1202 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 MTMR3Q13615 1198 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 ANKRD20A3Q5VUR7 823 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 DZIP3Q86Y13 1208 aaKnown RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 C14orf93Q9H972 538 aaKnown RBP11.83□□□□□ -0.52
CLIP1-209ENST00000537178 FAM114A2Q9NRY5 505 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 TSKSQ9UJT2 592 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 KCNH3Q9ULD8 1083 aa11.83□□□□□ -0.52
CLIP1-209ENST00000537178 NPATQ14207 1427 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 MAGEA1P43355 309 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 STRN3Q13033 797 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 HELLSQ9NRZ9 838 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 CTTNBP2NLQ9P2B4 639 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 PTPRMP28827 1452 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 IRS4O14654 1257 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-209ENST00000537178 SLC39A6Q13433 755 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 PNMA8AQ86V59 439 aaPredicted RBP11.82□□□□□ -0.52
CLIP1-209ENST00000537178 GAS2L3Q86XJ1 694 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 TRIM35Q9UPQ4 493 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 MAIP1Q8WWC4 291 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 MRRFQ96E11 262 aaKnown RBP11.82□□□□□ -0.52
CLIP1-209ENST00000537178 TMOD4Q9NZQ9 345 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 ARHGEF35A5YM69 484 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 GOLGA6BA6NDN3 693 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 CHMLP26374 656 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 SARNPP82979 210 aaKnown RBP11.82□□□□□ -0.52
CLIP1-209ENST00000537178 ANO1Q5XXA6 986 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 DCUN1D2Q6PH85 259 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 NSMCE1Q8WV22 266 aa11.82□□□□□ -0.52
CLIP1-209ENST00000537178 SOS1Q07889 1333 aaPredicted RBP11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CEP104O60308 925 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 FLOT1O75955 427 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CUL4BQ13620 913 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 SYCE1Q8N0S2 351 aa11.81□□□□□ -0.52
CLIP1-209ENST00000537178 CACYBPQ9HB71 228 aaKnown RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms