RNA–Protein interactions for RNA: ENST00000535896.6

SYNE1-233, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5

Gene SYNE1, Length 1,388 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-233ENST00000535896 HPSEQ9Y251 543 aa7.3□□□□□ -1.24
SYNE1-233ENST00000535896 RTCBQ9Y3I0 505 aaKnown RBP7.3□□□□□ -1.24
SYNE1-233ENST00000535896 MYH14Q7Z406 1995 aaKnown RBP7.3□□□□□ -1.24
SYNE1-233ENST00000535896 MYH2Q9UKX2 1941 aa7.3□□□□□ -1.24
SYNE1-233ENST00000535896 DLEC1Q9Y238 1755 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CDHR2Q9BYE9 1310 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 A0A1B0GUL7 405 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CPLX1O14810 134 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 GNPATO15228 680 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 ZSCAN12O43309 604 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 RPS6KA4O75676 772 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 FDPSP14324 419 aaKnown RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 H2AFXP16104 143 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 IL6STP40189 918 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TUBB4BP68371 445 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CBX1P83916 185 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 MYL5Q02045 173 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 KIF23Q02241 960 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 ZNF827Q17R98 1081 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CCDC93Q567U6 631 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 ANO1Q5XXA6 986 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TMED8Q6PL24 325 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CCDC129Q6ZRS4 1044 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 FILIP1Q7Z7B0 1213 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TRIML1Q8N9V2 468 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 WASF1Q92558 559 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CCDC34Q96HJ3 373 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TMEM87BQ96K49 555 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 SEC62Q99442 399 aaKnown RBP7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TFCP2L1Q9NZI6 479 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 CEP126Q9P2H0 1117 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 DACH1Q9UI36 760 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 TSKSQ9UJT2 592 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 USP16Q9Y5T5 823 aa7.29□□□□□ -1.24
SYNE1-233ENST00000535896 RIC1Q4ADV7 1423 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 GOLGA8BA8MQT2 603 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ARHGAP6O43182 974 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 PRC1O43663 620 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 CUTAO60888 179 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ZNF202O95125 648 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 NDUFA8P51970 172 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ETF1P62495 437 aaKnown RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 TRDNQ13061 729 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 BMS1Q14692 1282 aaKnown RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 NCAPHQ15003 741 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 DPCR1Q3MIW9 517 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 AXDND1Q5T1B0 1012 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 E4F1Q66K89 784 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 INTS5Q6P9B9 1019 aaKnown RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 SGMS1Q86VZ5 419 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 TSC1Q92574 1164 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 PPP1R13BQ96KQ4 1090 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 MPHOSPH8Q99549 860 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ISCA1Q9BUE6 129 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 TMX1Q9H3N1 280 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ORC3Q9UBD5 711 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 DNAI1Q9UI46 699 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ZNF215Q9UL58 517 aaPredicted RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ANGEL1Q9UNK9 670 aaKnown RBP7.28□□□□□ -1.24
SYNE1-233ENST00000535896 ZBTB1Q9Y2K1 713 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 NUP98P52948 1817 aa7.28□□□□□ -1.24
SYNE1-233ENST00000535896 CASZ1Q86V15 1759 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 PNPLA7Q6ZV29 1317 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 KLF18A0A0U1RQI7 1052 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 EFCAB8A8MWE9 144 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 ZNF213O14771 459 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 PCCAP05165 728 aaPredicted RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 PFKFB1P16118 471 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 LIFRP42702 1097 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 SYKP43405 635 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 EIF5P55010 431 aaKnown RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 CCT2P78371 535 aaKnown RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 TUBB2AQ13885 445 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 R3HDM1Q15032 1099 aaKnown RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 PPP2R5BQ15173 497 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 UBE3CQ15386 1083 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 ALX1Q15699 326 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 CCDC57Q2TAC2 916 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 TTC39AQ5SRH9 613 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 TRAPPC3LQ5T215 181 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 RESP18Q5W5W9 173 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 KANK3Q6NY19 840 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 OLFM4Q6UX06 510 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 SLC16A10Q8TF71 515 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 NEUROD6Q96NK8 337 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 TUBB2BQ9BVA1 445 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 XPO4Q9C0E2 1151 aaKnown RBP7.27□□□□□ -1.25
SYNE1-233ENST00000535896 TBC1D2BQ9UPU7 963 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 MYH13Q9UKX3 1938 aa7.27□□□□□ -1.25
SYNE1-233ENST00000535896 A0A1B0GVL5 298 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 USP27XA6NNY8 438 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 M0R2C6 588 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 MAP3K7O43318 606 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 SMC2O95347 1197 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 FGAP02671 866 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 A1BGP04217 495 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 CSF1RP07333 972 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 RFC4P35249 363 aa7.26□□□□□ -1.25
SYNE1-233ENST00000535896 METAP2P50579 478 aaKnown RBP eCLIP7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms