RNA–Protein interactions for RNA: ENST00000535668.1

CLSTN3-206, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-206ENST00000535668 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.75□□□□□ -0.21
CLSTN3-206ENST00000535668 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.75□□□□□ -0.21
CLSTN3-206ENST00000535668 CDK5RAP2Q96SN8 1893 aa13.75□□□□□ -0.21
CLSTN3-206ENST00000535668 PLXNB2O15031 1838 aa13.75□□□□□ -0.21
CLSTN3-206ENST00000535668 USP17L10C9JJH3 530 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 MAPK4P31152 587 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 JAG1P78504 1218 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 NECAB2Q7Z6G3 386 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 CCDC84Q86UT8 332 aaPredicted RBP13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 TMEM57Q8N5G2 664 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 GDF15Q99988 308 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 DBNDD2Q9BQY9 259 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 NOL10Q9BSC4 688 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 RBPJLQ9UBG7 517 aa13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 DBNLQ9UJU6 430 aaKnown RBP13.74□□□□□ -0.21
CLSTN3-206ENST00000535668 FAM196BA6NMK8 535 aa13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 TFRCP02786 760 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 HERVK_113P62684 666 aa13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 POTEEQ6S8J3 1075 aa13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 GPRC5AQ8NFJ5 357 aa13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 P2RX7Q99572 595 aaKnown RBP13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 HMX1Q9NP08 348 aaPredicted RBP13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 AATFQ9NY61 560 aaKnown RBP eCLIP13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 ZBTB21Q9ULJ3 1066 aa13.73□□□□□ -0.21
CLSTN3-206ENST00000535668 COL6A3P12111 3177 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 EVI5O60447 810 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 HOXC6P09630 235 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 COL6A1P12109 1028 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 MTMR2Q13614 643 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 TTC39AQ5SRH9 613 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 MORN1Q5T089 497 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 TGFBRAP1Q8WUH2 860 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 EAF2Q96CJ1 260 aaPredicted RBP13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 PAWRQ96IZ0 340 aaKnown RBP13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 NBPF3Q9H094 633 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 TXNRD2Q9NNW7 524 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 EMILIN3Q9NT22 766 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 TMOD4Q9NZQ9 345 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 TNNQ9UQP3 1299 aa13.72□□□□□ -0.21
CLSTN3-206ENST00000535668 ALPK3Q96L96 1907 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 SURF6O75683 361 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 IRX3P78415 501 aaPredicted RBP13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 TRIB2Q92519 343 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 NUDT12Q9BQG2 462 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 KIAA1683Q9H0B3 1180 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 PIH1D3Q9NQM4 214 aaKnown RBP13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 PALD1Q9ULE6 856 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 RABGAP1Q9Y3P9 1069 aa13.71□□□□□ -0.21
CLSTN3-206ENST00000535668 HLA-DOAP06340 250 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 ZAP70P43403 619 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 USP14P54578 494 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 ERVK-9P63128 1117 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 ERVK-24P63145 666 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 GABPAQ06546 454 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 LRIT3Q3SXY7 679 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 LHX8Q68G74 356 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L2Q6R6M4 530 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 ERC1Q8IUD2 1116 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 FRAT1Q92837 279 aaPredicted RBP13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 CLUAP1Q96AJ1 413 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 RIOK1Q9BRS2 568 aaKnown RBP13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 SERPINB13Q9UIV8 391 aa13.7□□□□□ -0.22
CLSTN3-206ENST00000535668 Q3C1V9 767 aa13.69□□□□□ -0.22
CLSTN3-206ENST00000535668 TTC6Q86TZ1 520 aa13.69□□□□□ -0.22
CLSTN3-206ENST00000535668 MAPKAPK5Q8IW41 473 aa13.69□□□□□ -0.22
CLSTN3-206ENST00000535668 SNRKQ9NRH2 765 aa13.69□□□□□ -0.22
CLSTN3-206ENST00000535668 MYO5AQ9Y4I1 1855 aaKnown RBP13.69□□□□□ -0.22
CLSTN3-206ENST00000535668 DDX60LQ5H9U9 1706 aaKnown RBP13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L15C9J2P7 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L13C9JLJ4 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L11C9JVI0 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L18D6R9N7 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L22D6RA61 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L17D6RBQ6 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L19D6RCP7 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L20D6RJB6 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 RLBP1P12271 317 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 USP17L24Q0WX57 530 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 HSP90AB4PQ58FF6 505 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 CEP85Q6P2H3 762 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 CATSPERGQ6ZRH7 1159 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 GPR142Q7Z601 462 aa13.68□□□□□ -0.22
CLSTN3-206ENST00000535668 CNMDO75829 334 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 ECM2O94769 699 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 PRKAR2AP13861 404 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 CYP7A1P22680 504 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 RGS2P41220 211 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 CCNA1P78396 465 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 MAP3K12Q12852 859 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 TTF1Q15361 905 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 CRACR2BQ8N4Y2 399 aaPredicted RBP13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 DIS3LQ8TF46 1054 aaKnown RBP13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 APBA2Q99767 749 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 PORCNQ9H237 461 aa13.67□□□□□ -0.22
CLSTN3-206ENST00000535668 PFASO15067 1338 aa13.66□□□□□ -0.22
CLSTN3-206ENST00000535668 MYH1P12882 1939 aa13.66□□□□□ -0.22
CLSTN3-206ENST00000535668 SLC15A5A6NIM6 579 aa13.66□□□□□ -0.22
CLSTN3-206ENST00000535668 MSCO60682 206 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms