RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 C20orf194Q5TEA3 1177 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 TREML4Q6UXN2 200 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 WFDC8Q8IUA0 241 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 TRMT2AQ8IZ69 625 aaKnown RBP8.11□□□□□ -1.11
USP28-202ENST00000535607 TTC9Q92623 222 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 RNF34Q969K3 372 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 TCF12Q99081 682 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 POP1Q99575 1024 aaKnown RBP8.11□□□□□ -1.11
USP28-202ENST00000535607 PANK3Q9H999 370 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 ABCB6Q9NP58 842 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 ADAMTS8Q9UP79 889 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 SAMM50Q9Y512 469 aa8.11□□□□□ -1.11
USP28-202ENST00000535607 CDC42BPGQ6DT37 1551 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 CELA2BP08218 269 aaPredicted RBP8.1□□□□□ -1.11
USP28-202ENST00000535607 HS1BP3Q53T59 392 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 HS2ST1Q7LGA3 356 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 IL22RA1Q8N6P7 574 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 HHIPQ96QV1 700 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 CLEC4MQ9H2X3 399 aaPredicted RBP8.1□□□□□ -1.11
USP28-202ENST00000535607 METTL5Q9NRN9 209 aaKnown RBP8.1□□□□□ -1.11
USP28-202ENST00000535607 TRIM33Q9UPN9 1127 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 PTPRUQ92729 1446 aa8.1□□□□□ -1.11
USP28-202ENST00000535607 TULP4Q9NRJ4 1543 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 METTL12A8MUP2 240 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 ALBP02768 609 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 PPP2R1AP30153 589 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 TNNT2P45379 298 aaPredicted RBP8.09□□□□□ -1.11
USP28-202ENST00000535607 GRIA4P48058 902 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 ST13P50502 369 aaKnown RBP8.09□□□□□ -1.11
USP28-202ENST00000535607 IKBKEQ14164 716 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 CCDC85BQ15834 202 aaPredicted RBP8.09□□□□□ -1.11
USP28-202ENST00000535607 BTBD6Q96KE9 485 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 PUS7Q96PZ0 661 aaKnown RBP8.09□□□□□ -1.11
USP28-202ENST00000535607 TESK2Q96S53 571 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 PPME1Q9Y570 386 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 NCOA3Q9Y6Q9 1424 aa8.09□□□□□ -1.11
USP28-202ENST00000535607 MYOM1P52179 1685 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 USP19O94966 1318 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 SPDYE3A6NKU9 549 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 NFKBIEO00221 500 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 RLBP1P12271 317 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 ITPKAP23677 461 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 CDC25BP30305 580 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 SPRED3Q2MJR0 410 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 RPS26P11Q5JNZ5 115 aaPredicted RBP8.08□□□□□ -1.12
USP28-202ENST00000535607 TPTE2Q6XPS3 522 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 GLIS3Q8NEA6 775 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 DCCP43146 1447 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 NALCNQ8IZF0 1738 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 ROBO2Q9HCK4 1378 aa8.08□□□□□ -1.12
USP28-202ENST00000535607 IBTKQ9P2D0 1353 aaPredicted RBP8.08□□□□□ -1.12
USP28-202ENST00000535607 ITSN1Q15811 1721 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 ADGRL3Q9HAR2 1447 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 MCM5P33992 734 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 PCDH1Q08174 1060 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 PWP1Q13610 501 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 MEI1Q5TIA1 1274 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 TMEM132EQ6IEE7 984 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 LYPD4Q6UWN0 246 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 PODNQ7Z5L7 613 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 ZSCAN30Q86W11 494 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 SLC26A8Q96RN1 970 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 C22orf23Q9BZE7 217 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 ADAM19Q9H013 955 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 CHMP4BQ9H444 224 aaKnown RBP8.07□□□□□ -1.12
USP28-202ENST00000535607 ZNF576Q9H609 170 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 DISP3Q9P2K9 1392 aa8.07□□□□□ -1.12
USP28-202ENST00000535607 EVC2Q86UK5 1308 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 TOPAZ1Q8N9V7 1692 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 H3BRJ5 948 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 CT47B1P0C2W7 299 aaPredicted RBP8.06□□□□□ -1.12
USP28-202ENST00000535607 ERCC5P28715 1186 aaPredicted RBP8.06□□□□□ -1.12
USP28-202ENST00000535607 HSPA2P54652 639 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 SLC7A3Q8WY07 619 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 SNX21Q969T3 373 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 PRAM1Q96QH2 718 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 MDFIQ99750 246 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 SH2B1Q9NRF2 756 aaPredicted RBP8.06□□□□□ -1.12
USP28-202ENST00000535607 TMEM39AQ9NV64 488 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 GGT7Q9UJ14 662 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 USP31Q70CQ4 1352 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 PLEKHH1Q9ULM0 1364 aa8.06□□□□□ -1.12
USP28-202ENST00000535607 KIF16BQ96L93 1317 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 ANKARQ7Z5J8 1434 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 SHISA8B8ZZ34 492 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 FBXO24O75426 580 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 OFD1O75665 1012 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 HSP90AB1P08238 724 aaKnown RBP8.05□□□□□ -1.12
USP28-202ENST00000535607 CTSHP09668 335 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 KCNA6P17658 529 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 AFF1P51825 1210 aaKnown RBP8.05□□□□□ -1.12
USP28-202ENST00000535607 TRAPPC3LQ5T215 181 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 MSL1Q68DK7 614 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 C1orf229Q6ZS94 237 aaPredicted RBP8.05□□□□□ -1.12
USP28-202ENST00000535607 SV2BQ7L1I2 683 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 RELL1Q8IUW5 271 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 NOC4LQ9BVI4 516 aaKnown RBP8.05□□□□□ -1.12
USP28-202ENST00000535607 SOX13Q9UN79 622 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 STARD13Q9Y3M8 1113 aa8.05□□□□□ -1.12
USP28-202ENST00000535607 FMN2Q9NZ56 1722 aa8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms