RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 RLBP1P12271 317 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 LMNB1P20700 586 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 GABPB1Q06547 395 aaPredicted RBP6.71□□□□□ -1.34
CD44-236ENST00000533222 SOX4Q06945 474 aaPredicted RBP6.71□□□□□ -1.34
CD44-236ENST00000533222 SNAP47Q5SQN1 464 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 TRIM42Q8IWZ5 723 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 DZIP1LQ8IYY4 767 aaKnown RBP6.71□□□□□ -1.34
CD44-236ENST00000533222 ARMC10Q8N2F6 343 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 GOLM1Q8NBJ4 401 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 C2CD4AQ8NCU7 369 aaPredicted RBP6.71□□□□□ -1.34
CD44-236ENST00000533222 PLPPR2Q96GM1 343 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 SUGCTQ9HAC7 445 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 CYP4F12Q9HCS2 524 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 SMC4Q9NTJ3 1288 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 ZHX1Q9UKY1 873 aaPredicted RBP6.71□□□□□ -1.34
CD44-236ENST00000533222 ACTL7BQ9Y614 415 aa6.71□□□□□ -1.34
CD44-236ENST00000533222 SCAPERQ9BY12 1400 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 LOC102724159A0A0B4J2E5 919 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 TLR3O15455 904 aaKnown RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 EIF4EBP3O60516 100 aaPredicted RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 PROCP04070 461 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 ERCC5P28715 1186 aaPredicted RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 EIF4A3P38919 411 aaKnown RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 GATA4P43694 442 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 CRKP46108 304 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 TNNI2P48788 182 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 MRE11P49959 708 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 PWP2Q15269 919 aaKnown RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 SGO2Q562F6 1265 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 ZC3H12AQ5D1E8 599 aaKnown RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 WIPI1Q5MNZ9 446 aaPredicted RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 ANKRD34AQ69YU3 496 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 C12orf40Q86WS4 652 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 ZNF526Q8TF50 670 aaPredicted RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 FAM46AQ96IP4 442 aaKnown RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 HIRIP3Q9BW71 556 aaPredicted RBP6.7□□□□□ -1.34
CD44-236ENST00000533222 ACBD3Q9H3P7 528 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 TPSG1Q9NRR2 321 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 FAM105AQ9NUU6 356 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 DONSONQ9NYP3 566 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 UBP1Q9NZI7 540 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 CALCOCO1Q9P1Z2 691 aa6.7□□□□□ -1.34
CD44-236ENST00000533222 IBTKQ9P2D0 1353 aaPredicted RBP6.69□□□□□ -1.34
CD44-236ENST00000533222 FAM221AA4D161 298 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 KLHL33A6NCF5 533 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 VGLL3A8MV65 326 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 MCM5P33992 734 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 ID3Q02535 119 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 PWP1Q13610 501 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 PPM1JQ5JR12 505 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 HP1BP3Q5SSJ5 553 aaPredicted RBP6.69□□□□□ -1.34
CD44-236ENST00000533222 GPAT2Q6NUI2 795 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 CDPF1Q6NVV7 123 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 DYMQ7RTS9 669 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 UBE3DQ7Z6J8 389 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 ZNF296Q8WUU4 475 aaPredicted RBP6.69□□□□□ -1.34
CD44-236ENST00000533222 TIGD1Q96MW7 591 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 FANCD2OSQ96PS1 177 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 TACO1Q9BSH4 297 aaKnown RBP6.69□□□□□ -1.34
CD44-236ENST00000533222 KCNQ5Q9NR82 932 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 DISC1Q9NRI5 854 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 CRIM1Q9NZV1 1036 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 ANAPC4Q9UJX5 808 aa6.69□□□□□ -1.34
CD44-236ENST00000533222 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.69□□□□□ -1.34
CD44-236ENST00000533222 CCDC144AA2RUR9 1427 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 PRAMEF27A3QJZ7 478 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 CTAGE5O15320 804 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 SART1O43290 800 aaKnown RBP6.68□□□□□ -1.34
CD44-236ENST00000533222 ZNF853P0CG23 659 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 RAB6AP20340 208 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 NTF4P34130 210 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 RIPK4P57078 832 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 DOC2BQ14184 412 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 HSP90B2PQ58FF3 399 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.68□□□□□ -1.34
CD44-236ENST00000533222 UTP4Q969X6 686 aaKnown RBP6.68□□□□□ -1.34
CD44-236ENST00000533222 TP53INP1Q96A56 240 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 EAF1Q96JC9 268 aaPredicted RBP6.68□□□□□ -1.34
CD44-236ENST00000533222 FEZ1Q99689 392 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 SPOCK3Q9BQ16 436 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 SPON2Q9BUD6 331 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 CEP41Q9BYV8 373 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 HIF3AQ9Y2N7 669 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 RIPOR2Q9Y4F9 1068 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 CADPSQ9ULU8 1353 aa6.68□□□□□ -1.34
CD44-236ENST00000533222 PPP1R12AO14974 1030 aaPredicted RBP6.67□□□□□ -1.34
CD44-236ENST00000533222 GAS2O43903 313 aaKnown RBP6.67□□□□□ -1.34
CD44-236ENST00000533222 GREM1O60565 184 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 CILPO75339 1184 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 HCLS1P14317 486 aaPredicted RBP6.67□□□□□ -1.34
CD44-236ENST00000533222 PAK2Q13177 524 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 TTLL4Q14679 1199 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 FAM196AQ6ZSG2 479 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 KIAA0825Q8IV33 1275 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 GATAD2BQ8WXI9 593 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 ELMO3Q96BJ8 720 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 MYH16Q9H6N6 1097 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 PAXBP1Q9Y5B6 917 aa6.67□□□□□ -1.34
CD44-236ENST00000533222 GFRA2O00451 464 aa6.66□□□□□ -1.34
CD44-236ENST00000533222 COQ9O75208 318 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms