RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 FGRP09769 529 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 PTPRAP18433 802 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 MAP2K2P36507 400 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 JAG1P78504 1218 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 PPATQ06203 517 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 DYNLL2Q96FJ2 89 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 ESYT1Q9BSJ8 1104 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 ELP3Q9H9T3 547 aa17.26■□□□□ 0.35
CPSF1-206ENST00000531480 CDC45O75419 566 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 CDK8P49336 464 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 PPARAQ07869 468 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 PPIL2Q13356 520 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 SLC44A5Q8NCS7 719 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 OPTNQ96CV9 577 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 TRIM34Q9BYJ4 488 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 KCNH4Q9UQ05 1017 aa17.25■□□□□ 0.35
CPSF1-206ENST00000531480 ASNSP08243 561 aa17.24■□□□□ 0.35
CPSF1-206ENST00000531480 CERKLQ49MI3 558 aaPredicted RBP17.24■□□□□ 0.35
CPSF1-206ENST00000531480 CNKSR2Q8WXI2 1034 aa17.24■□□□□ 0.35
CPSF1-206ENST00000531480 MS4A4AQ96JQ5 239 aa17.24■□□□□ 0.35
CPSF1-206ENST00000531480 CCDC17Q96LX7 622 aa17.24■□□□□ 0.35
CPSF1-206ENST00000531480 TBC1D2Q9BYX2 928 aa17.24■□□□□ 0.35
CPSF1-206ENST00000531480 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.24■□□□□ 0.35
CPSF1-206ENST00000531480 TESPA1A2RU30 521 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-206ENST00000531480 MINDY4BA8MYZ0 360 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 REM2Q8IYK8 340 aaPredicted RBP17.23■□□□□ 0.35
CPSF1-206ENST00000531480 MAP4K1Q92918 833 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 ZIC5Q96T25 663 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 NBPF3Q9H094 633 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 PICK1Q9NRD5 415 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 ZBTB21Q9ULJ3 1066 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 AFG3L2Q9Y4W6 797 aa17.23■□□□□ 0.35
CPSF1-206ENST00000531480 IRF6O14896 467 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 AOC2O75106 756 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 RASA1P20936 1047 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 GUCY1A2P33402 732 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 TM4SF4P48230 202 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 PTH1RQ03431 593 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 SHROOM1Q2M3G4 852 aaPredicted RBP17.22■□□□□ 0.35
CPSF1-206ENST00000531480 WDR18Q9BV38 432 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 LSG1Q9H089 658 aaKnown RBP17.22■□□□□ 0.35
CPSF1-206ENST00000531480 TACC3Q9Y6A5 838 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 PLIN4Q96Q06 1357 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 LOC285556D6RIA3 1793 aa17.22■□□□□ 0.35
CPSF1-206ENST00000531480 USP17L5A8MUK1 530 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 CXCL11O14625 94 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 GDF11O95390 407 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 PCP11498 1178 aaKnown RBP17.21■□□□□ 0.35
CPSF1-206ENST00000531480 CTCFP49711 727 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-206ENST00000531480 LBX1P52954 281 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 ABCB5Q2M3G0 1257 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 OTUD5Q96G74 571 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 ZNF287Q9HBT7 754 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 WBP1LQ9NX94 342 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.21■□□□□ 0.35
CPSF1-206ENST00000531480 CTNNA3Q9UI47 895 aa17.21■□□□□ 0.35
CPSF1-206ENST00000531480 MANSC4A6NHS7 340 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-206ENST00000531480 ORC4O43929 436 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 GH2P01242 217 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 SLC3A2P08195 630 aaKnown RBP17.2■□□□□ 0.34
CPSF1-206ENST00000531480 NT5C2P49902 561 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 GTF2A2P52657 109 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 INHBEP58166 350 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 KIF23Q02241 960 aaPredicted RBP17.2■□□□□ 0.34
CPSF1-206ENST00000531480 PDE4BQ07343 736 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 MOGSQ13724 837 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 CASC1Q6TDU7 716 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 TMEM179Q6ZVK1 233 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 STAG1Q8WVM7 1258 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.2■□□□□ 0.34
CPSF1-206ENST00000531480 ZHX2Q9Y6X8 837 aa17.2■□□□□ 0.34
CPSF1-206ENST00000531480 IGKV6D-41A0A0C4DH26 115 aa17.19■□□□□ 0.34
CPSF1-206ENST00000531480 HSPA8P11142 646 aaKnown RBP17.19■□□□□ 0.34
CPSF1-206ENST00000531480 AKR1B1P15121 316 aa17.19■□□□□ 0.34
CPSF1-206ENST00000531480 CTDSPL2Q05D32 466 aa17.19■□□□□ 0.34
CPSF1-206ENST00000531480 ZNF280CQ8ND82 737 aa17.19■□□□□ 0.34
CPSF1-206ENST00000531480 TSKSQ9UJT2 592 aa17.19■□□□□ 0.34
CPSF1-206ENST00000531480 U3KPZ7 1027 aaPredicted RBP17.19■□□□□ 0.34
CPSF1-206ENST00000531480 A0A0G2JLL6 359 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-206ENST00000531480 ZNF213O14771 459 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 MAP2K1Q02750 393 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-206ENST00000531480 SREBF2Q12772 1141 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 SNAPC2Q13487 334 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 SH3D19Q5HYK7 790 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 AKNAD1Q5T1N1 836 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 PRRT2Q7Z6L0 340 aaPredicted RBP17.18■□□□□ 0.34
CPSF1-206ENST00000531480 TBC1D10CQ8IV04 446 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 AS3MTQ9HBK9 375 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 CABP5Q9NP86 173 aa17.18■□□□□ 0.34
CPSF1-206ENST00000531480 EPB41L2O43491 1005 aaKnown RBP17.17■□□□□ 0.34
CPSF1-206ENST00000531480 CETPP11597 493 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 NOVP48745 357 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 SEPT2Q15019 361 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 IMMTQ16891 758 aaKnown RBP17.17■□□□□ 0.34
CPSF1-206ENST00000531480 CCDC84Q86UT8 332 aaPredicted RBP17.17■□□□□ 0.34
CPSF1-206ENST00000531480 SIAH1Q8IUQ4 282 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 NEDD1Q8NHV4 660 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 BRI3BPQ8WY22 251 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 PTPN18Q99952 460 aa17.17■□□□□ 0.34
CPSF1-206ENST00000531480 MKNK2Q9HBH9 465 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms