RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 DPF3Q92784 378 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 HTATIP2Q9BUP3 242 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 MORF4L1Q9UBU8 362 aa13.87□□□□□ -0.19
VPS28-214ENST00000531032 MYH1P12882 1939 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 PLXNB2O15031 1838 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 C19orf81C9J6K1 198 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 IDH1O75874 414 aaKnown RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 HLA-DOAP06340 250 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 DYNLL1P63167 89 aaKnown RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 IRX3P78415 501 aaPredicted RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 SHROOM1Q2M3G4 852 aaPredicted RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 TMED8Q6PL24 325 aaPredicted RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 TRIM34Q9BYJ4 488 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 TMOD4Q9NZQ9 345 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 SAP30BPQ9UHR5 308 aaKnown RBP13.86□□□□□ -0.19
VPS28-214ENST00000531032 GJD2Q9UKL4 321 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 ZBTB21Q9ULJ3 1066 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 ZBED9Q6R2W3 1325 aa13.86□□□□□ -0.19
VPS28-214ENST00000531032 DDX60LQ5H9U9 1706 aaKnown RBP13.85□□□□□ -0.19
VPS28-214ENST00000531032 USP17L10C9JJH3 530 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 GDF11O95390 407 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 ERC1Q8IUD2 1116 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 DEFB118Q96PH6 123 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 CRISPLD2Q9H0B8 497 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 TAOK2Q9UL54 1235 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 EXOC6BQ9Y2D4 811 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 TRIOBPQ9H2D6 2365 aa13.85□□□□□ -0.19
VPS28-214ENST00000531032 RANBP2P49792 3224 aaKnown RBP13.85□□□□□ -0.19
VPS28-214ENST00000531032 HMGCRP04035 888 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 CHRDL2Q6WN34 429 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 AACSQ86V21 672 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 MAGEB6Q8N7X4 407 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 MIGA1Q8NAN2 632 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.84□□□□□ -0.193e-6■■□□□ 14.1
VPS28-214ENST00000531032 EHD4Q9H223 541 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 ANTXR1Q9H6X2 564 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 NDUFB9Q9Y6M9 179 aa13.84□□□□□ -0.19
VPS28-214ENST00000531032 TFRCP02786 760 aaKnown RBP13.83□□□□□ -0.2
VPS28-214ENST00000531032 HERVK_113P62684 666 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 MAP3K12Q12852 859 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 TATDN1Q6P1N9 297 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 PANK1Q8TE04 598 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 P2RX7Q99572 595 aaKnown RBP13.83□□□□□ -0.2
VPS28-214ENST00000531032 TXNRD2Q9NNW7 524 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 EMILIN3Q9NT22 766 aa13.83□□□□□ -0.2
VPS28-214ENST00000531032 GH2P01242 217 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 USP5P45974 858 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 HSP90AB4PQ58FF6 505 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 USP17L2Q6R6M4 530 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 GPRC5AQ8NFJ5 357 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 GTF3C2Q8WUA4 911 aaPredicted RBP13.82□□□□□ -0.2
VPS28-214ENST00000531032 C12orf42Q96LP6 360 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 PRO3102Q9H379 93 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 RBM27Q9P2N5 1060 aaKnown RBP13.82□□□□□ -0.2
VPS28-214ENST00000531032 RBPJLQ9UBG7 517 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 SERPINB13Q9UIV8 391 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 NR2E3Q9Y5X4 410 aa13.82□□□□□ -0.2
VPS28-214ENST00000531032 PEX10O60683 326 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 POTEEQ6S8J3 1075 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 TTC6Q86TZ1 520 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 RHPN1Q8TCX5 695 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 SOCS4Q8WXH5 440 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 TRIB2Q92519 343 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 RIOK1Q9BRS2 568 aaKnown RBP13.81□□□□□ -0.2
VPS28-214ENST00000531032 IL1RAPL2Q9NP60 686 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 ALPK3Q96L96 1907 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 RPTORQ8N122 1335 aa13.81□□□□□ -0.2
VPS28-214ENST00000531032 NAV1Q8NEY1 1877 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 SZT2Q5T011 3432 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 XRCC5P13010 732 aaKnown RBP13.8□□□□□ -0.2
VPS28-214ENST00000531032 MAPK4P31152 587 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 ERVK-9P63128 1117 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 ERVK-24P63145 666 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 TRIM32Q13049 653 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 TTF1Q15361 905 aaPredicted RBP13.8□□□□□ -0.2
VPS28-214ENST00000531032 MAP3K21Q5TCX8 1036 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 ANKLE1Q8NAG6 615 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 DIS3LQ8TF46 1054 aaKnown RBP13.8□□□□□ -0.2
VPS28-214ENST00000531032 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.8□□□□□ -0.2
VPS28-214ENST00000531032 PAWRQ96IZ0 340 aaKnown RBP13.8□□□□□ -0.2
VPS28-214ENST00000531032 NUDT12Q9BQG2 462 aa13.8□□□□□ -0.2
VPS28-214ENST00000531032 HMX1Q9NP08 348 aaPredicted RBP13.8□□□□□ -0.2
VPS28-214ENST00000531032 EVI5O60447 810 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 MS4A1P11836 297 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 CYP2B6P20813 491 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 SHMT1P34896 483 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 PLCD1P51178 756 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 Q3C1V9 767 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 CERKLQ49MI3 558 aaPredicted RBP13.79□□□□□ -0.2
VPS28-214ENST00000531032 NECAB2Q7Z6G3 386 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 RPAP2Q8IXW5 612 aaPredicted RBP13.79□□□□□ -0.2
VPS28-214ENST00000531032 CLASRPQ8N2M8 674 aaKnown RBP13.79□□□□□ -0.2
VPS28-214ENST00000531032 USP6NLQ92738 828 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 KIF1BPQ96EK5 621 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 FEZ1Q99689 392 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 KIAA1683Q9H0B3 1180 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 PORCNQ9H237 461 aa13.79□□□□□ -0.2
VPS28-214ENST00000531032 MAGEB6P1A0A0J9YX57 407 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 PDE6AP16499 860 aa13.78□□□□□ -0.2
VPS28-214ENST00000531032 MNX1P50219 401 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms