RNA–Protein interactions for RNA: ENST00000530784.1

CSDE1-213, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-213ENST00000530784 BACH2Q9BYV9 841 aa11.61□□□□□ -0.55
CSDE1-213ENST00000530784 TACC3Q9Y6A5 838 aa11.61□□□□□ -0.55
CSDE1-213ENST00000530784 ARHGEF11O15085 1522 aa11.6□□□□□ -0.55
CSDE1-213ENST00000530784 POLA1P09884 1462 aaPredicted RBP11.6□□□□□ -0.55
CSDE1-213ENST00000530784 HID1Q8IV36 788 aa11.6□□□□□ -0.55
CSDE1-213ENST00000530784 FAM181AQ8N9Y4 354 aa11.6□□□□□ -0.55
CSDE1-213ENST00000530784 GGT7Q9UJ14 662 aa11.6□□□□□ -0.55
CSDE1-213ENST00000530784 U3KQE9 123 aa11.6□□□□□ -0.55
CSDE1-213ENST00000530784 AQRO60306 1485 aaKnown RBP eCLIP11.59□□□□□ -0.55
CSDE1-213ENST00000530784 LRIG2O94898 1065 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 GARTP22102 1010 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 SNAP47Q5SQN1 464 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 FAM214BQ7L5A3 538 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 GOLM1Q8NBJ4 401 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 FOXQ1Q9C009 403 aa11.59□□□□□ -0.55
CSDE1-213ENST00000530784 CAP2P40123 477 aa11.58□□□□□ -0.56
CSDE1-213ENST00000530784 DIEXFQ68CQ4 756 aaKnown RBP11.58□□□□□ -0.56
CSDE1-213ENST00000530784 HS2ST1Q7LGA3 356 aa11.58□□□□□ -0.56
CSDE1-213ENST00000530784 RGS22Q8NE09 1264 aa11.58□□□□□ -0.56
CSDE1-213ENST00000530784 HEXIM2Q96MH2 286 aaKnown RBP11.58□□□□□ -0.56
CSDE1-213ENST00000530784 BPNT1O95861 308 aa11.57□□□□□ -0.56
CSDE1-213ENST00000530784 PGRP06401 933 aa11.57□□□□□ -0.56
CSDE1-213ENST00000530784 BSDC1Q9NW68 430 aaPredicted RBP11.57□□□□□ -0.56
CSDE1-213ENST00000530784 CORINQ9Y5Q5 1042 aa11.57□□□□□ -0.56
CSDE1-213ENST00000530784 FBXL19Q6PCT2 694 aa11.56□□□□□ -0.56
CSDE1-213ENST00000530784 FBXO27Q8NI29 283 aa11.56□□□□□ -0.56
CSDE1-213ENST00000530784 TJP2Q9UDY2 1190 aa11.56□□□□□ -0.56
CSDE1-213ENST00000530784 CHD1O14646 1710 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 SLITRK5O94991 958 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 EOMESO95936 686 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 WNT11O96014 354 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 EIF4A3P38919 411 aaKnown RBP11.55□□□□□ -0.56
CSDE1-213ENST00000530784 PDE4BQ07343 736 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 PRAMEF13Q5VWM6 474 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 PLD6Q8N2A8 252 aaKnown RBP11.55□□□□□ -0.56
CSDE1-213ENST00000530784 CCDC39Q9UFE4 941 aa11.55□□□□□ -0.56
CSDE1-213ENST00000530784 CST3P01034 146 aaPredicted RBP11.54□□□□□ -0.56
CSDE1-213ENST00000530784 PRNPP04156 253 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 OXCT1P55809 520 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 MFSD2AQ8NA29 543 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 XAGE3Q8WTP9 111 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 MIPEPQ99797 713 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 RAD54L2Q9Y4B4 1467 aa11.54□□□□□ -0.56
CSDE1-213ENST00000530784 SOGA1O94964 1423 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 FAM196AQ6ZSG2 479 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 ARHGAP27Q6ZUM4 889 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 RIN3Q8TB24 985 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 NETO1Q8TDF5 533 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 ACSF2Q96CM8 615 aaPredicted RBP11.53□□□□□ -0.56
CSDE1-213ENST00000530784 TMEM87BQ96K49 555 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 DPH2Q9BQC3 489 aaPredicted RBP11.53□□□□□ -0.56
CSDE1-213ENST00000530784 KCNQ5Q9NR82 932 aa11.53□□□□□ -0.56
CSDE1-213ENST00000530784 FGD5Q6ZNL6 1462 aa11.52□□□□□ -0.56
CSDE1-213ENST00000530784 TLR3O15455 904 aaKnown RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 PLCG1P19174 1290 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 ZNF76P36508 570 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 GP2P55259 537 aaKnown RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 NFXL1Q6ZNB6 911 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 MRPL41Q8IXM3 137 aaKnown RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 ZNF296Q8WUU4 475 aaPredicted RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 ADAMTS1Q9UHI8 967 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 GTF2IRD1Q9UHL9 959 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 ADAM30Q9UKF2 790 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 ANGEL1Q9UNK9 670 aaKnown RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 POLR3KQ9Y2Y1 108 aaPredicted RBP11.52□□□□□ -0.57
CSDE1-213ENST00000530784 WDR97A6NE52 1622 aa11.52□□□□□ -0.57
CSDE1-213ENST00000530784 GRIN3BO60391 1043 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 GREM1O60565 184 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 RECKO95980 971 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 FANCCQ00597 558 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 MPP2Q14168 576 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 SLC6A19Q695T7 634 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 VSIG10LQ86VR7 867 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 MCATQ8IVS2 390 aaKnown RBP11.51□□□□□ -0.57
CSDE1-213ENST00000530784 MKNK2Q9HBH9 465 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 PLAGL2Q9UPG8 496 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 SUPT16HQ9Y5B9 1047 aaKnown RBP11.51□□□□□ -0.57
CSDE1-213ENST00000530784 CNTNAP4Q9C0A0 1308 aa11.51□□□□□ -0.57
CSDE1-213ENST00000530784 TDRD9Q8NDG6 1382 aaKnown RBP11.51□□□□□ -0.57
CSDE1-213ENST00000530784 IGF2BP3O00425 579 aaKnown RBP eCLIP11.5□□□□□ -0.57
CSDE1-213ENST00000530784 CEACAM5P06731 702 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 ITIH2P19823 946 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 VAMP1P23763 118 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 LETMD1Q6P1Q0 360 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 REC114Q7Z4M0 266 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 OAS3Q9Y6K5 1087 aaKnown RBP11.5□□□□□ -0.57
CSDE1-213ENST00000530784 SNAPC4Q5SXM2 1469 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 CUX1P39880 1505 aa11.5□□□□□ -0.57
CSDE1-213ENST00000530784 CYB5RLQ6IPT4 315 aa11.49□□□□□ -0.57
CSDE1-213ENST00000530784 PRDM5Q9NQX1 630 aaPredicted RBP11.49□□□□□ -0.57
CSDE1-213ENST00000530784 TPX2Q9ULW0 747 aaKnown RBP11.49□□□□□ -0.57
CSDE1-213ENST00000530784 CCDC9Q9Y3X0 531 aaKnown RBP11.49□□□□□ -0.57
CSDE1-213ENST00000530784 UNCXA6NJT0 531 aa11.48□□□□□ -0.57
CSDE1-213ENST00000530784 UPK3BL1B0FP48 263 aa11.48□□□□□ -0.57
CSDE1-213ENST00000530784 UPK3BL2E5RIL1 263 aa11.48□□□□□ -0.57
CSDE1-213ENST00000530784 RBAK-RBAKDNI3L0D1 243 aa11.48□□□□□ -0.57
CSDE1-213ENST00000530784 CRKP46108 304 aa11.48□□□□□ -0.57
CSDE1-213ENST00000530784 BCL7CQ8WUZ0 217 aaPredicted RBP11.48□□□□□ -0.57
CSDE1-213ENST00000530784 MRRFQ96E11 262 aaKnown RBP11.48□□□□□ -0.57
CSDE1-213ENST00000530784 METTL5Q9NRN9 209 aaKnown RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms