RNA–Protein interactions for RNA: ENST00000530041.5

USP47-209, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 3

Gene USP47, Length 767 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-209ENST00000530041 SNX11Q9Y5W9 270 aa8.13□□□□□ -1.11
USP47-209ENST00000530041 FAM221AA4D161 298 aa8.12□□□□□ -1.11
USP47-209ENST00000530041 AOC3Q16853 763 aa8.12□□□□□ -1.11
USP47-209ENST00000530041 CBLL1Q75N03 491 aa8.12□□□□□ -1.11
USP47-209ENST00000530041 MRPL41Q8IXM3 137 aaKnown RBP8.12□□□□□ -1.11
USP47-209ENST00000530041 ADAM30Q9UKF2 790 aa8.12□□□□□ -1.11
USP47-209ENST00000530041 GNAT3A8MTJ3 354 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 BPNT1O95861 308 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 F13A1P00488 732 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 CD8BP10966 210 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 SLC6A19Q695T7 634 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 LETMD1Q6P1Q0 360 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 SPACA3Q8IXA5 215 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 TMEM87BQ96K49 555 aa8.11□□□□□ -1.11
USP47-209ENST00000530041 TPX2Q9ULW0 747 aaKnown RBP8.11□□□□□ -1.11
USP47-209ENST00000530041 NKPD1Q17RQ9 610 aa8.1□□□□□ -1.11
USP47-209ENST00000530041 ZNF746Q6NUN9 644 aaPredicted RBP8.1□□□□□ -1.11
USP47-209ENST00000530041 C22orf34Q6ZV56 151 aa8.1□□□□□ -1.11
USP47-209ENST00000530041 ERMP1Q7Z2K6 904 aa8.1□□□□□ -1.11
USP47-209ENST00000530041 MCATQ8IVS2 390 aaKnown RBP8.1□□□□□ -1.11
USP47-209ENST00000530041 RIN3Q8TB24 985 aa8.1□□□□□ -1.11
USP47-209ENST00000530041 MINDY4BA8MYZ0 360 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 ZNF16P17020 682 aaPredicted RBP8.09□□□□□ -1.11
USP47-209ENST00000530041 FUT4P22083 530 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 CD96P40200 585 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 MFAP1P55081 439 aaKnown RBP8.09□□□□□ -1.11
USP47-209ENST00000530041 PLCL1Q15111 1095 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 SNAP47Q5SQN1 464 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 SFRP5Q5T4F7 317 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 XAGE3Q8WTP9 111 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 ASB11Q8WXH4 323 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 ACSF2Q96CM8 615 aaPredicted RBP8.09□□□□□ -1.11
USP47-209ENST00000530041 KBTBD4Q9NVX7 518 aa8.09□□□□□ -1.11
USP47-209ENST00000530041 CNTNAP4Q9C0A0 1308 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 ZNF865P0CJ78 1059 aaPredicted RBP8.08□□□□□ -1.12
USP47-209ENST00000530041 CLCN7P51798 805 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 FAM160A1Q05DH4 1040 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 GOLM1Q8NBJ4 401 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 COX4I2Q96KJ9 171 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 DPH2Q9BQC3 489 aaPredicted RBP8.08□□□□□ -1.12
USP47-209ENST00000530041 CORINQ9Y5Q5 1042 aa8.08□□□□□ -1.12
USP47-209ENST00000530041 PRR36Q9H6K5 1346 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 PAX4O43316 350 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 PLCG1P19174 1290 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 GARTP22102 1010 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 CYP7A1P22680 504 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 MPP2Q14168 576 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 TMEM201Q5SNT2 666 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 ANGEL2Q5VTE6 544 aaKnown RBP8.07□□□□□ -1.12
USP47-209ENST00000530041 MFSD4AQ8N468 514 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 COPRSQ9NQ92 184 aa8.07□□□□□ -1.12
USP47-209ENST00000530041 PRR33A8MZF0 331 aa8.06□□□□□ -1.12
USP47-209ENST00000530041 ZNF792Q3KQV3 632 aa8.06□□□□□ -1.12
USP47-209ENST00000530041 FAM196AQ6ZSG2 479 aa8.06□□□□□ -1.12
USP47-209ENST00000530041 HS2ST1Q7LGA3 356 aa8.06□□□□□ -1.12
USP47-209ENST00000530041 KCNQ5Q9NR82 932 aa8.06□□□□□ -1.12
USP47-209ENST00000530041 PITPNM2Q9BZ72 1349 aa8.05□□□□□ -1.12
USP47-209ENST00000530041 FAM155AB1AL88 458 aaPredicted RBP8.05□□□□□ -1.12
USP47-209ENST00000530041 FBXL19Q6PCT2 694 aa8.05□□□□□ -1.12
USP47-209ENST00000530041 CDH24Q86UP0 819 aa8.05□□□□□ -1.12
USP47-209ENST00000530041 GGT7Q9UJ14 662 aa8.05□□□□□ -1.12
USP47-209ENST00000530041 POLR3KQ9Y2Y1 108 aaPredicted RBP8.05□□□□□ -1.12
USP47-209ENST00000530041 CAPN6Q9Y6Q1 641 aa8.05□□□□□ -1.12
USP47-209ENST00000530041 UPK3BL1B0FP48 263 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 UPK3BL2E5RIL1 263 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 EIF4A3P38919 411 aaKnown RBP8.04□□□□□ -1.12
USP47-209ENST00000530041 ETV3P41162 512 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 KIR3DL1P43629 444 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 YARSP54577 528 aaKnown RBP8.04□□□□□ -1.12
USP47-209ENST00000530041 REC114Q7Z4M0 266 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 FAM13CQ8NE31 585 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 PI4K2BQ8TCG2 481 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 HSPA12BQ96MM6 686 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 SUPT16HQ9Y5B9 1047 aaKnown RBP8.04□□□□□ -1.12
USP47-209ENST00000530041 ROBO2Q9HCK4 1378 aa8.04□□□□□ -1.12
USP47-209ENST00000530041 GRIN3BO60391 1043 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 GREM1O60565 184 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 CBX7O95931 251 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 RNASE1P07998 156 aaKnown RBP8.03□□□□□ -1.12
USP47-209ENST00000530041 ITGB5P18084 799 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 IKZF1Q13422 519 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 LDLRAD1Q5T700 205 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 SLC23A3Q6PIS1 610 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 TMEM87AQ8NBN3 555 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 DNAJB8Q8NHS0 232 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 FBXO27Q8NI29 283 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 CYB5D2Q8WUJ1 264 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 LRRC3Q9BY71 257 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 SEMA3GQ9NS98 782 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 MBNL3Q9NUK0 354 aaKnown RBP8.03□□□□□ -1.12
USP47-209ENST00000530041 REV1Q9UBZ9 1251 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 ADAMTS6Q9UKP5 1117 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 CEP131Q9UPN4 1083 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 ST14Q9Y5Y6 855 aa8.03□□□□□ -1.12
USP47-209ENST00000530041 HTR3BO95264 441 aa8.02□□□□□ -1.13
USP47-209ENST00000530041 JUNBP17275 347 aaPredicted RBP8.02□□□□□ -1.13
USP47-209ENST00000530041 CDKAL1Q5VV42 579 aa8.02□□□□□ -1.13
USP47-209ENST00000530041 SLFN12Q8IYM2 578 aa8.02□□□□□ -1.13
USP47-209ENST00000530041 PPP1R13LQ8WUF5 828 aa8.02□□□□□ -1.13
USP47-209ENST00000530041 FMNL2Q96PY5 1086 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms