RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 WDR18Q9BV38 432 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 RBM27Q9P2N5 1060 aaKnown RBP14.81□□□□□ -0.04
USH1C-208ENST00000529563 RCAN3Q9UKA8 241 aa14.81□□□□□ -0.04
USH1C-208ENST00000529563 MAST2Q6P0Q8 1798 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 IGSF3O75054 1194 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 MS4A1P11836 297 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 DYNLL1P63167 89 aaKnown RBP14.8□□□□□ -0.04
USH1C-208ENST00000529563 NECAB2Q7Z6G3 386 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 ADGRA1Q86SQ6 560 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 CERS3Q8IU89 383 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 MIGA1Q8NAN2 632 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 PAWRQ96IZ0 340 aaKnown RBP14.8□□□□□ -0.04
USH1C-208ENST00000529563 PAGR1Q9BTK6 254 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 BCL11AQ9H165 835 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 HMX1Q9NP08 348 aaPredicted RBP14.8□□□□□ -0.04
USH1C-208ENST00000529563 PIH1D3Q9NQM4 214 aaKnown RBP14.8□□□□□ -0.04
USH1C-208ENST00000529563 GINM1Q9NU53 330 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 TRIOBPQ9H2D6 2365 aa14.8□□□□□ -0.04
USH1C-208ENST00000529563 LOC285556D6RIA3 1793 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 ZBTB7BO15156 539 aaPredicted RBP14.79□□□□□ -0.04
USH1C-208ENST00000529563 CYP2B6P20813 491 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 MAP3K12Q12852 859 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 UBE2Q1Q7Z7E8 422 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 ERC1Q8IUD2 1116 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 MAGEB6Q8N7X4 407 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 ZNF512BQ96KM6 892 aaPredicted RBP14.79□□□□□ -0.04
USH1C-208ENST00000529563 P2RX7Q99572 595 aaKnown RBP14.79□□□□□ -0.04
USH1C-208ENST00000529563 NUDT12Q9BQG2 462 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 PAK6Q9NQU5 681 aaPredicted RBP14.79□□□□□ -0.04
USH1C-208ENST00000529563 DBNLQ9UJU6 430 aaKnown RBP14.79□□□□□ -0.04
USH1C-208ENST00000529563 ZBTB21Q9ULJ3 1066 aa14.79□□□□□ -0.04
USH1C-208ENST00000529563 RPTORQ8N122 1335 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 MAPK4P31152 587 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 HERVK_113P62684 666 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 RAB3GAP1Q15042 981 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 ZYXQ15942 572 aaKnown RBP14.78□□□□□ -0.04
USH1C-208ENST00000529563 WDR78Q5VTH9 848 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 USP17L2Q6R6M4 530 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 AACSQ86V21 672 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 GTF3C2Q8WUA4 911 aaPredicted RBP14.78□□□□□ -0.04
USH1C-208ENST00000529563 SOCS4Q8WXH5 440 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 TLR7Q9NYK1 1049 aaKnown RBP14.78□□□□□ -0.04
USH1C-208ENST00000529563 MORF4L1Q9UBU8 362 aa14.78□□□□□ -0.04
USH1C-208ENST00000529563 GH2P01242 217 aa14.77□□□□□ -0.05
USH1C-208ENST00000529563 ZKSCAN1P17029 563 aaPredicted RBP14.77□□□□□ -0.05
USH1C-208ENST00000529563 HOXA7P31268 230 aaPredicted RBP14.77□□□□□ -0.05
USH1C-208ENST00000529563 TTC6Q86TZ1 520 aa14.77□□□□□ -0.05
USH1C-208ENST00000529563 TRMT44Q8IYL2 757 aaKnown RBP14.77□□□□□ -0.05
USH1C-208ENST00000529563 DNAJC18Q9H819 358 aa14.77□□□□□ -0.05
USH1C-208ENST00000529563 CABP5Q9NP86 173 aa14.77□□□□□ -0.05
USH1C-208ENST00000529563 NOP58Q9Y2X3 529 aaKnown RBP14.77□□□□□ -0.05
USH1C-208ENST00000529563 GLRX3O76003 335 aaKnown RBP14.76□□□□□ -0.05
USH1C-208ENST00000529563 POLR3DP05423 398 aaPredicted RBP14.76□□□□□ -0.05
USH1C-208ENST00000529563 SHROOM1Q2M3G4 852 aaPredicted RBP14.76□□□□□ -0.05
USH1C-208ENST00000529563 HSP90AB4PQ58FF6 505 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 C7orf61Q8IZ16 206 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 ANKLE1Q8NAG6 615 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 DIS3LQ8TF46 1054 aaKnown RBP14.76□□□□□ -0.05
USH1C-208ENST00000529563 EAF2Q96CJ1 260 aaPredicted RBP14.76□□□□□ -0.05
USH1C-208ENST00000529563 NBPF3Q9H094 633 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 CRISPLD2Q9H0B8 497 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 SERPINB13Q9UIV8 391 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 GJD2Q9UKL4 321 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 EXOC6BQ9Y2D4 811 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 NDUFB9Q9Y6M9 179 aa14.76□□□□□ -0.05
USH1C-208ENST00000529563 APBB1O00213 710 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 PRKAR2AP13861 404 aaKnown RBP14.75□□□□□ -0.05
USH1C-208ENST00000529563 RGS2P41220 211 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 USP14P54578 494 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 ERVK-9P63128 1117 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 ERVK-24P63145 666 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 CCNA1P78396 465 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 JAG1P78504 1218 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 TRIM32Q13049 653 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 TTF1Q15361 905 aaPredicted RBP14.75□□□□□ -0.05
USH1C-208ENST00000529563 ABCB5Q2M3G0 1257 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 CERKLQ49MI3 558 aaPredicted RBP14.75□□□□□ -0.05
USH1C-208ENST00000529563 PLEKHH3Q7Z736 793 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 TRIB2Q92519 343 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 C11orf49Q9H6J7 331 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 DOCK3Q8IZD9 2030 aa14.75□□□□□ -0.05
USH1C-208ENST00000529563 MAGEB6P1A0A0J9YX57 407 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L15C9J2P7 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L13C9JLJ4 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L11C9JVI0 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L18D6R9N7 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L22D6RA61 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L17D6RBQ6 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L19D6RCP7 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L20D6RJB6 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 MPHOSPH10O00566 681 aaKnown RBP14.74□□□□□ -0.05
USH1C-208ENST00000529563 PEX10O60683 326 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 RLBP1P12271 317 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 USP17L24Q0WX57 530 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 CEP85Q6P2H3 762 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 GPR142Q7Z601 462 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 METTL16Q86W50 562 aaKnown RBP14.74□□□□□ -0.05
USH1C-208ENST00000529563 TXNRD2Q9NNW7 524 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 STAP2Q9UGK3 403 aa14.74□□□□□ -0.05
USH1C-208ENST00000529563 ZMYND8Q9ULU4 1186 aaPredicted RBP14.74□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms