RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 P2RX7Q99572 595 aaKnown RBP28.9■■■□□ 2.22
CPSF1-202ENST00000527827 PIH1D3Q9NQM4 214 aaKnown RBP28.9■■■□□ 2.22
CPSF1-202ENST00000527827 PALD1Q9ULE6 856 aa28.9■■■□□ 2.22
CPSF1-202ENST00000527827 PEX10O60683 326 aa28.89■■■□□ 2.22
CPSF1-202ENST00000527827 ZAP70P43403 619 aa28.89■■■□□ 2.22
CPSF1-202ENST00000527827 IRX3P78415 501 aaPredicted RBP28.89■■■□□ 2.22
CPSF1-202ENST00000527827 OS9Q13438 667 aaPredicted RBP28.89■■■□□ 2.22
CPSF1-202ENST00000527827 ZKSCAN2Q63HK3 967 aa28.89■■■□□ 2.22
CPSF1-202ENST00000527827 TMOD4Q9NZQ9 345 aa28.89■■■□□ 2.22
CPSF1-202ENST00000527827 RPTORQ8N122 1335 aa28.89■■■□□ 2.21
CPSF1-202ENST00000527827 SURF6O75683 361 aaKnown RBP28.88■■■□□ 2.21
CPSF1-202ENST00000527827 GDF11O95390 407 aa28.88■■■□□ 2.21
CPSF1-202ENST00000527827 NECAB2Q7Z6G3 386 aa28.88■■■□□ 2.21
CPSF1-202ENST00000527827 TXNRD2Q9NNW7 524 aa28.88■■■□□ 2.21
CPSF1-202ENST00000527827 C19orf81C9J6K1 198 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 IGSF3O75054 1194 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 DYNLL1P63167 89 aaKnown RBP28.87■■■□□ 2.21
CPSF1-202ENST00000527827 CRACR2BQ8N4Y2 399 aaPredicted RBP28.87■■■□□ 2.21
CPSF1-202ENST00000527827 ANKLE1Q8NAG6 615 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 TRIB2Q92519 343 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 C1orf115Q9H7X2 142 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 HMX1Q9NP08 348 aaPredicted RBP28.87■■■□□ 2.21
CPSF1-202ENST00000527827 GINM1Q9NU53 330 aa28.87■■■□□ 2.21
CPSF1-202ENST00000527827 USP17L10C9JJH3 530 aa28.86■■■□□ 2.21
CPSF1-202ENST00000527827 HERVK_113P62684 666 aa28.86■■■□□ 2.21
CPSF1-202ENST00000527827 TLR7Q9NYK1 1049 aaKnown RBP28.86■■■□□ 2.21
CPSF1-202ENST00000527827 SAP30BPQ9UHR5 308 aaKnown RBP28.86■■■□□ 2.21
CPSF1-202ENST00000527827 DBNLQ9UJU6 430 aaKnown RBP28.86■■■□□ 2.21
CPSF1-202ENST00000527827 ZBTB21Q9ULJ3 1066 aa28.86■■■□□ 2.21
CPSF1-202ENST00000527827 NOP58Q9Y2X3 529 aaKnown RBP28.86■■■□□ 2.21
CPSF1-202ENST00000527827 MYH1P12882 1939 aa28.86■■■□□ 2.21
CPSF1-202ENST00000527827 A0A1W2PPC1 479 aa28.85■■■□□ 2.21
CPSF1-202ENST00000527827 MNX1P50219 401 aaPredicted RBP28.85■■■□□ 2.21
CPSF1-202ENST00000527827 TRIM34Q9BYJ4 488 aa28.85■■■□□ 2.21
CPSF1-202ENST00000527827 DDX60LQ5H9U9 1706 aaKnown RBP28.85■■■□□ 2.21
CPSF1-202ENST00000527827 CYP2B6P20813 491 aa28.84■■■□□ 2.21
CPSF1-202ENST00000527827 GPRC5AQ8NFJ5 357 aa28.84■■■□□ 2.21
CPSF1-202ENST00000527827 RBPJLQ9UBG7 517 aa28.84■■■□□ 2.21
CPSF1-202ENST00000527827 STAP2Q9UGK3 403 aa28.84■■■□□ 2.21
CPSF1-202ENST00000527827 CYP7A1P22680 504 aa28.83■■■□□ 2.21
CPSF1-202ENST00000527827 MAP3K21Q5TCX8 1036 aa28.83■■■□□ 2.21
CPSF1-202ENST00000527827 POTEEQ6S8J3 1075 aa28.83■■■□□ 2.21
CPSF1-202ENST00000527827 CCDC8Q9H0W5 538 aaPredicted RBP28.83■■■□□ 2.21
CPSF1-202ENST00000527827 HLA-DOAP06340 250 aa28.82■■■□□ 2.2
CPSF1-202ENST00000527827 Q3C1V9 767 aa28.82■■■□□ 2.2
CPSF1-202ENST00000527827 EAF2Q96CJ1 260 aaPredicted RBP28.82■■■□□ 2.2
CPSF1-202ENST00000527827 NUDT12Q9BQG2 462 aa28.82■■■□□ 2.2
CPSF1-202ENST00000527827 EMILIN3Q9NT22 766 aa28.82■■■□□ 2.2
CPSF1-202ENST00000527827 SOX1O00570 391 aaPredicted RBP28.81■■■□□ 2.2
CPSF1-202ENST00000527827 XRCC5P13010 732 aaKnown RBP28.81■■■□□ 2.2
CPSF1-202ENST00000527827 NBPF3Q9H094 633 aa28.81■■■□□ 2.2
CPSF1-202ENST00000527827 OGDHLQ9ULD0 1010 aa28.81■■■□□ 2.2
CPSF1-202ENST00000527827 ERVK-9P63128 1117 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 ERVK-24P63145 666 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 C7orf61Q8IZ16 206 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 SOCS4Q8WXH5 440 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 USP6NLQ92738 828 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 PORCNQ9H237 461 aa28.8■■■□□ 2.2
CPSF1-202ENST00000527827 GH2P01242 217 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 RLBP1P12271 317 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 PRKAR2AP13861 404 aaKnown RBP28.79■■■□□ 2.2
CPSF1-202ENST00000527827 MAPK4P31152 587 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 USP17L2Q6R6M4 530 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 MIGA1Q8NAN2 632 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 GDF15Q99988 308 aa28.79■■■□□ 2.2
CPSF1-202ENST00000527827 IDH1O75874 414 aaKnown RBP28.78■■■□□ 2.2
CPSF1-202ENST00000527827 TATDN1Q6P1N9 297 aa28.78■■■□□ 2.2
CPSF1-202ENST00000527827 C11orf49Q9H6J7 331 aa28.78■■■□□ 2.2
CPSF1-202ENST00000527827 NDUFB9Q9Y6M9 179 aa28.78■■■□□ 2.2
CPSF1-202ENST00000527827 LAMA3Q16787 3333 aa28.78■■■□□ 2.2
CPSF1-202ENST00000527827 GPR142Q7Z601 462 aa28.77■■■□□ 2.2
CPSF1-202ENST00000527827 MAGEB6Q8N7X4 407 aa28.77■■■□□ 2.2
CPSF1-202ENST00000527827 GTF3C2Q8WUA4 911 aaPredicted RBP28.77■■■□□ 2.2
CPSF1-202ENST00000527827 PAGR1Q9BTK6 254 aa28.77■■■□□ 2.2
CPSF1-202ENST00000527827 ZMYND8Q9ULU4 1186 aaPredicted RBP28.77■■■□□ 2.2
CPSF1-202ENST00000527827 PDE3AQ14432 1141 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 MORN1Q5T089 497 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 ITPRIPQ8IWB1 547 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 FTSJ3Q8IY81 847 aaKnown RBP28.76■■■□□ 2.19
CPSF1-202ENST00000527827 LRCH3Q96II8 777 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 C12orf42Q96LP6 360 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 ANTXR1Q9H6X2 564 aa28.76■■■□□ 2.19
CPSF1-202ENST00000527827 ZKSCAN1P17029 563 aaPredicted RBP28.75■■■□□ 2.19
CPSF1-202ENST00000527827 BMP8BP34820 402 aa28.75■■■□□ 2.19
CPSF1-202ENST00000527827 USP5P45974 858 aa28.75■■■□□ 2.19
CPSF1-202ENST00000527827 CACNB2Q08289 660 aaPredicted RBP28.75■■■□□ 2.19
CPSF1-202ENST00000527827 CCL14Q16627 93 aa28.75■■■□□ 2.19
CPSF1-202ENST00000527827 CERS3Q8IU89 383 aa28.75■■■□□ 2.19
CPSF1-202ENST00000527827 TRMT44Q8IYL2 757 aaKnown RBP28.75■■■□□ 2.19
CPSF1-202ENST00000527827 EHD4Q9H223 541 aa28.75■■■□□ 2.19
CPSF1-202ENST00000527827 CNMDO75829 334 aa28.74■■■□□ 2.19
CPSF1-202ENST00000527827 PLEKHH3Q7Z736 793 aa28.74■■■□□ 2.19
CPSF1-202ENST00000527827 SERPINB13Q9UIV8 391 aa28.74■■■□□ 2.19
CPSF1-202ENST00000527827 PFASO15067 1338 aa28.73■■■□□ 2.19
CPSF1-202ENST00000527827 RGS2P41220 211 aa28.73■■■□□ 2.19
CPSF1-202ENST00000527827 ZYXQ15942 572 aaKnown RBP28.73■■■□□ 2.19
CPSF1-202ENST00000527827 CCAR1Q8IX12 1150 aaKnown RBP28.73■■■□□ 2.19
CPSF1-202ENST00000527827 SYN1P17600 705 aa28.72■■■□□ 2.19
CPSF1-202ENST00000527827 CCND3P30281 292 aaPredicted RBP28.72■■■□□ 2.19
CPSF1-202ENST00000527827 CEP85Q6P2H3 762 aa28.72■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms