RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	PLCG1	P19174	1290 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	ZNF394	Q53GI3	561 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	FAM214B	Q7L5A3	538 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	KIAA0825	Q8IV33	1275 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	SPON2	Q9BUD6	331 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	NT5C1A	Q9BXI3	368 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	GTF2IRD1	Q9UHL9	959 aa		7.92	□□□□□ -1.14
CD44-223	ENST00000526553	IGF2BP3	O00425	579 aa	Known RBP eCLIP	7.91	□□□□□ -1.14
CD44-223	ENST00000526553	TLR3	O15455	904 aa	Known RBP	7.91	□□□□□ -1.14
CD44-223	ENST00000526553	SLITRK5	O94991	958 aa		7.91	□□□□□ -1.14
CD44-223	ENST00000526553	HTR3B	O95264	441 aa		7.91	□□□□□ -1.14
CD44-223	ENST00000526553	EOMES	O95936	686 aa		7.91	□□□□□ -1.14
CD44-223	ENST00000526553	CRK	P46108	304 aa		7.91	□□□□□ -1.14
CD44-223	ENST00000526553	MIPEP	Q99797	713 aa		7.91	□□□□□ -1.14
CD44-223	ENST00000526553	ZC3H7B	Q9UGR2	993 aa	Known RBP	7.91	□□□□□ -1.14
CD44-223	ENST00000526553	DDX41	Q9UJV9	622 aa	Known RBP	7.91	□□□□□ -1.14
CD44-223	ENST00000526553	LOC100996750	A0A140TA64	210 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	PRNP	P04156	253 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	HDLBP	Q00341	1268 aa	Known RBP	7.9	□□□□□ -1.14
CD44-223	ENST00000526553	APOBR	Q0VD83	1088 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	HEXIM2	Q96MH2	286 aa	Known RBP	7.9	□□□□□ -1.14
CD44-223	ENST00000526553	KRTAP4-6	Q9BYQ5	205 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	BSDC1	Q9NW68	430 aa	Predicted RBP	7.9	□□□□□ -1.14
CD44-223	ENST00000526553	UBP1	Q9NZI7	540 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	REV1	Q9UBZ9	1251 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	MAPK8IP1	Q9UQF2	711 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	PCDHGB7	Q9Y5F8	929 aa		7.9	□□□□□ -1.14
CD44-223	ENST00000526553	GRIN3B	O60391	1043 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	ATE1	O95260	518 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	YARS	P54577	528 aa	Known RBP	7.89	□□□□□ -1.15
CD44-223	ENST00000526553	OXCT1	P55809	520 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	RACK1	P63244	317 aa	Known RBP	7.89	□□□□□ -1.15
CD44-223	ENST00000526553	ZNF746	Q6NUN9	644 aa	Predicted RBP	7.89	□□□□□ -1.15
CD44-223	ENST00000526553	LETMD1	Q6P1Q0	360 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	SLITRK4	Q8IW52	837 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	NETO1	Q8TDF5	533 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	EAF1	Q96JC9	268 aa	Predicted RBP	7.89	□□□□□ -1.15
CD44-223	ENST00000526553	BRMS1	Q9HCU9	246 aa		7.89	□□□□□ -1.15
CD44-223	ENST00000526553	PRDM5	Q9NQX1	630 aa	Predicted RBP	7.89	□□□□□ -1.15
CD44-223	ENST00000526553	CEACAM5	P06731	702 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	C22orf34	Q6ZV56	151 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	VSIG10L	Q86VR7	867 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	SLFN12	Q8IYM2	578 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	ZNF654	Q8IZM8	581 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	REXO1	Q8N1G1	1221 aa	Known RBP	7.88	□□□□□ -1.15
CD44-223	ENST00000526553	FAM181A	Q8N9Y4	354 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	FAM13C	Q8NE31	585 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	DPH2	Q9BQC3	489 aa	Predicted RBP	7.88	□□□□□ -1.15
CD44-223	ENST00000526553	EHMT1	Q9H9B1	1298 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553		U3KQE9	123 aa		7.88	□□□□□ -1.15
CD44-223	ENST00000526553	MLEC	Q14165	292 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	IFI16	Q16666	785 aa	Known RBP	7.87	□□□□□ -1.15
CD44-223	ENST00000526553	SEZ6	Q53EL9	994 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	ARHGAP27	Q6ZUM4	889 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	NT5DC4	Q86YG4	428 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	XAGE3	Q8WTP9	111 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	CYB5D2	Q8WUJ1	264 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	NKD1	Q969G9	470 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	ZNF428	Q96B54	188 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	COX4I2	Q96KJ9	171 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	PCDHB14	Q9Y5E9	798 aa		7.87	□□□□□ -1.15
CD44-223	ENST00000526553	ZNF165	P49910	485 aa		7.86	□□□□□ -1.15
CD44-223	ENST00000526553	PLD6	Q8N2A8	252 aa	Known RBP	7.86	□□□□□ -1.15
CD44-223	ENST00000526553	MISP3	Q96FF7	219 aa		7.86	□□□□□ -1.15
CD44-223	ENST00000526553	TNKS2	Q9H2K2	1166 aa		7.86	□□□□□ -1.15
CD44-223	ENST00000526553	CCDC39	Q9UFE4	941 aa		7.86	□□□□□ -1.15
CD44-223	ENST00000526553	TPX2	Q9ULW0	747 aa	Known RBP	7.86	□□□□□ -1.15
CD44-223	ENST00000526553	GNAT3	A8MTJ3	354 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	UPK3BL1	B0FP48	263 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	UPK3BL2	E5RIL1	263 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	WNT11	O96014	354 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	ZNF865	P0CJ78	1059 aa	Predicted RBP	7.85	□□□□□ -1.15
CD44-223	ENST00000526553	CYP7A1	P22680	504 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	ETV3	P41162	512 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	SFRP5	Q5T4F7	317 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	NBPF11	Q86T75	865 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	STK11IP	Q8N1F8	1099 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	DNAJB8	Q8NHS0	232 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	RIN3	Q8TB24	985 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	KLHL3	Q9UH77	587 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	ANGEL1	Q9UNK9	670 aa	Known RBP	7.85	□□□□□ -1.15
CD44-223	ENST00000526553	PLAGL2	Q9UPG8	496 aa		7.85	□□□□□ -1.15
CD44-223	ENST00000526553	DNAJA2	O60884	412 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	ITIH2	P19823	946 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	RBM25	P49756	843 aa	Known RBP	7.84	□□□□□ -1.15
CD44-223	ENST00000526553	TGIF2	Q9GZN2	237 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	GMIP	Q9P107	970 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	CEP131	Q9UPN4	1083 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	7.84	□□□□□ -1.15
CD44-223	ENST00000526553	SNX11	Q9Y5W9	270 aa		7.84	□□□□□ -1.15
CD44-223	ENST00000526553	TMEM265	A0A087WTH1	108 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	CHURC1-FNTB	B4DL54	471 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	ADAMTS4	O75173	837 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	MCM4	P33991	863 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	KIR3DL1	P43629	444 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	CLC	Q05315	142 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	C9orf131	Q5VYM1	1079 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	CDH24	Q86UP0	819 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	SPACA3	Q8IXA5	215 aa		7.83	□□□□□ -1.16
CD44-223	ENST00000526553	PPP1R13L	Q8WUF5	828 aa		7.83	□□□□□ -1.16

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