RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 NUDT12Q9BQG2 462 aa13.43□□□□□ -0.26
NEDD8-204ENST00000526430 CHMP4BQ9H444 224 aaKnown RBP13.43□□□□□ -0.26
NEDD8-204ENST00000526430 FBXO3Q9UK99 471 aa13.43□□□□□ -0.26
NEDD8-204ENST00000526430 RFX7Q2KHR2 1363 aa13.43□□□□□ -0.26
NEDD8-204ENST00000526430 IGHDP01880 384 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 CYP2B6P20813 491 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 FGFR2P21802 821 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 CCND3P30281 292 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-204ENST00000526430 ADAMTS19Q8TE59 1207 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 ASB2Q96Q27 587 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 C1QTNF1Q9BXJ1 281 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 SENP6Q9GZR1 1112 aaPredicted RBP13.42□□□□□ -0.26
NEDD8-204ENST00000526430 SIL1Q9H173 461 aa13.42□□□□□ -0.26
NEDD8-204ENST00000526430 ENTPD3O75355 529 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 RTP1P59025 263 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 WDR66Q8TBY9 1149 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 USP6NLQ92738 828 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 IDI2Q9BXS1 227 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 TBC1D2Q9BYX2 928 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 ASCC2Q9H1I8 757 aaPredicted RBP13.41□□□□□ -0.26
NEDD8-204ENST00000526430 DCTPP1Q9H773 170 aa13.41□□□□□ -0.26
NEDD8-204ENST00000526430 GBF1Q92538 1859 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 SURF6O75683 361 aaKnown RBP13.4□□□□□ -0.26
NEDD8-204ENST00000526430 PDE8BO95263 885 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 IL15P40933 162 aaPredicted RBP13.4□□□□□ -0.26
NEDD8-204ENST00000526430 TFCP2Q12800 502 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 AAMPQ13685 434 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 ZFPM1Q8IX07 1006 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 UHRF1Q96T88 793 aaPredicted RBP13.4□□□□□ -0.26
NEDD8-204ENST00000526430 THEGQ9P2T0 379 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 REV3LO60673 3130 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 CHD9Q3L8U1 2897 aa13.4□□□□□ -0.26
NEDD8-204ENST00000526430 DNM1LO00429 736 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 MSCO60682 206 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 RGS2P41220 211 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 RGS3P49796 1198 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 GRIN2CQ14957 1233 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 APBA2Q99767 749 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 USP40Q9NVE5 1235 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 EXOC6BQ9Y2D4 811 aa13.39□□□□□ -0.27
NEDD8-204ENST00000526430 MAPK4P31152 587 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 ATN1P54259 1190 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-204ENST00000526430 MRPS5P82675 430 aaKnown RBP13.38□□□□□ -0.27
NEDD8-204ENST00000526430 HDAC1Q13547 482 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-204ENST00000526430 SNX17Q15036 470 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 DIXDC1Q155Q3 683 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 SH3D19Q5HYK7 790 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 AKNAD1Q5T1N1 836 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 SH3BP5LQ7L8J4 393 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 ZNF280CQ8ND82 737 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 LPAR1Q92633 364 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 BADQ92934 168 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.38□□□□□ -0.27
NEDD8-204ENST00000526430 HCN4Q9Y3Q4 1203 aa13.38□□□□□ -0.27
NEDD8-204ENST00000526430 ZNF236Q9UL36 1845 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 TBC1D12O60347 775 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 HMGCS2P54868 508 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 TIMM10P62072 90 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 SPP2Q13103 211 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 G3BP1Q13283 466 aaKnown RBP eCLIP13.37□□□□□ -0.27
NEDD8-204ENST00000526430 CCL14Q16627 93 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 METTL24Q5JXM2 366 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 MORN1Q5T089 497 aa13.37□□□□□ -0.27
NEDD8-204ENST00000526430 DNAJB2P25686 324 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 CCDC84Q86UT8 332 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 ZSCAN29Q8IWY8 852 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 GPRC5AQ8NFJ5 357 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 RHPN1Q8TCX5 695 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 EAF2Q96CJ1 260 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 RNPC3Q96LT9 517 aaKnown RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 OSBPL5Q9H0X9 879 aaPredicted RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 PDLIM7Q9NR12 457 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 CEP126Q9P2H0 1117 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 DDX20Q9UHI6 824 aaKnown RBP13.36□□□□□ -0.27
NEDD8-204ENST00000526430 ATP11BQ9Y2G3 1177 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 SIPA1L1O43166 1804 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 CDK5RAP2Q96SN8 1893 aa13.36□□□□□ -0.27
NEDD8-204ENST00000526430 SMCHD1A6NHR9 2005 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 DDTLA6NHG4 134 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-204ENST00000526430 PRDX5P30044 214 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 ADORA1P30542 326 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 HOXA7P31268 230 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-204ENST00000526430 IRX3P78415 501 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-204ENST00000526430 C1orf53Q5VUE5 145 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 SLC39A5Q6ZMH5 540 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 GPR142Q7Z601 462 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 SMC5Q8IY18 1101 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 GAS2L1Q99501 681 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-204ENST00000526430 ZNF576Q9H609 170 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 TXNRD2Q9NNW7 524 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 GPR108Q9NPR9 543 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 PRDM5Q9NQX1 630 aaPredicted RBP13.35□□□□□ -0.27
NEDD8-204ENST00000526430 SALL1Q9NSC2 1324 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 CHD7Q9P2D1 2997 aa13.35□□□□□ -0.27
NEDD8-204ENST00000526430 FOCADQ5VW36 1801 aa13.34□□□□□ -0.27
NEDD8-204ENST00000526430 XIRP2A4UGR9 3374 aa13.34□□□□□ -0.27
NEDD8-204ENST00000526430 HMMRO75330 724 aa13.34□□□□□ -0.27
NEDD8-204ENST00000526430 LDHBP07195 334 aaKnown RBP13.34□□□□□ -0.27
NEDD8-204ENST00000526430 IFIT1P09914 478 aaKnown RBP13.34□□□□□ -0.27
NEDD8-204ENST00000526430 HERVK_113P62684 666 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms