RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 FAM221BA6H8Z2 402 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 CHURC1-FNTBB4DL54 471 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 CCNFP41002 786 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 UNC5AQ6ZN44 842 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 MICAL1Q8TDZ2 1067 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 TMEM87BQ96K49 555 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 SLC9A7Q96T83 725 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 MAPK8IP1Q9UQF2 711 aa6.8□□□□□ -1.32
CD44-220ENST00000525688 BICRAQ9NZM4 1560 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 PDPK1O15530 556 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 YARSP54577 528 aaKnown RBP6.79□□□□□ -1.32
CD44-220ENST00000525688 PRRT3Q5FWE3 981 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 ARSHQ5FYA8 562 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 LARP1BQ659C4 914 aaKnown RBP6.79□□□□□ -1.32
CD44-220ENST00000525688 ANKRD34AQ69YU3 496 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 ST7Q9NRC1 585 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 PICK1Q9NRD5 415 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 AP4E1Q9UPM8 1137 aa6.79□□□□□ -1.32
CD44-220ENST00000525688 F8W735 103 aaPredicted RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 FAM229AH3BQW9 127 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 GJB6O95452 261 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 NEFMP07197 916 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 LORP23490 312 aaPredicted RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 TTLL4Q14679 1199 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 EGFLAMQ63HQ2 1017 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 Q6ZS46 218 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 FAM178BQ8IXR5 827 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 ZNF669Q96BR6 464 aaPredicted RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 LENG1Q96BZ8 264 aaPredicted RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 RNPC3Q96LT9 517 aaKnown RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 PHAXQ9H814 394 aaKnown RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 FBRSQ9HAH7 460 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 KLHL3Q9UH77 587 aa6.78□□□□□ -1.32
CD44-220ENST00000525688 MRPL42Q9Y6G3 142 aaKnown RBP6.78□□□□□ -1.32
CD44-220ENST00000525688 LTBP3Q9NS15 1303 aa6.77□□□□□ -1.32
CD44-220ENST00000525688 UPK3BL1B0FP48 263 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 UPK3BL2E5RIL1 263 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 ENPP3O14638 875 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 RGS13O14921 159 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 DDAH1O94760 285 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 DRD2P14416 443 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 RAG1P15918 1043 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 HSD3B2P26439 372 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 SLBPQ14493 270 aaKnown RBP eCLIP6.77□□□□□ -1.33
CD44-220ENST00000525688 NCAPHQ15003 741 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 ZYXQ15942 572 aaKnown RBP6.77□□□□□ -1.33
CD44-220ENST00000525688 FDX2Q6P4F2 183 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 BEND7Q8N7W2 519 aaPredicted RBP6.77□□□□□ -1.33
CD44-220ENST00000525688 C12orf50Q8NA57 414 aaPredicted RBP6.77□□□□□ -1.33
CD44-220ENST00000525688 C2CD4AQ8NCU7 369 aaPredicted RBP6.77□□□□□ -1.33
CD44-220ENST00000525688 FAM13CQ8NE31 585 aa6.77□□□□□ -1.33
CD44-220ENST00000525688 ST13P5Q8NFI4 369 aaPredicted RBP6.77□□□□□ -1.33
CD44-220ENST00000525688 CST3P01034 146 aaPredicted RBP6.76□□□□□ -1.33
CD44-220ENST00000525688 SPATA31C1P0DKV0 1188 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 ASPAP45381 313 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 IFRD2Q12894 506 aaPredicted RBP6.76□□□□□ -1.33
CD44-220ENST00000525688 NKG7Q16617 165 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 C6orf15Q6UXA7 325 aaPredicted RBP6.76□□□□□ -1.33
CD44-220ENST00000525688 CDC37L1Q7L3B6 337 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 DYMQ7RTS9 669 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 DHX37Q8IY37 1157 aaKnown RBP6.76□□□□□ -1.33
CD44-220ENST00000525688 JMYQ8N9B5 988 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 ISL2Q96A47 359 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 DNAJC7Q99615 494 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 FAM105AQ9NUU6 356 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 ZNF214Q9UL59 606 aaPredicted RBP6.76□□□□□ -1.33
CD44-220ENST00000525688 ACTL7BQ9Y614 415 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 SCRIBQ14160 1630 aa6.76□□□□□ -1.33
CD44-220ENST00000525688 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP6.75□□□□□ -1.33
CD44-220ENST00000525688 CCDC85CA6NKD9 419 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 HCLS1P14317 486 aaPredicted RBP6.75□□□□□ -1.33
CD44-220ENST00000525688 TCEAL1Q15170 157 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 GRIK4Q16099 956 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 MRM1Q6IN84 353 aaKnown RBP6.75□□□□□ -1.33
CD44-220ENST00000525688 VHLLQ6RSH7 139 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 SHISA2Q6UWI4 295 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 PODNQ7Z5L7 613 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 SMYD4Q8IYR2 804 aaPredicted RBP6.75□□□□□ -1.33
CD44-220ENST00000525688 LILRB2Q8N423 598 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 DHRS1Q96LJ7 313 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 CCDC74BQ96LY2 380 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 AKTIPQ9H8T0 292 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 PIDD1Q9HB75 910 aa6.75□□□□□ -1.33
CD44-220ENST00000525688 B2RBV5 119 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 C9orf172C9J069 976 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 LRIG2O94898 1065 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 UBOX5O94941 541 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 SLC7A5Q01650 507 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 NRG1Q02297 640 aaPredicted RBP6.74□□□□□ -1.33
CD44-220ENST00000525688 BBS9Q3SYG4 887 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 EEPD1Q7L9B9 569 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 UBE3DQ7Z6J8 389 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 AGGF1Q8N302 714 aaeCLIP6.74□□□□□ -1.33
CD44-220ENST00000525688 CYB5D2Q8WUJ1 264 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 UBE2Q2Q8WVN8 375 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 KLHL6Q8WZ60 621 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 POLR3GLQ9BT43 218 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 CEP41Q9BYV8 373 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 ACSS3Q9H6R3 686 aa6.74□□□□□ -1.33
CD44-220ENST00000525688 PCOLCE2Q9UKZ9 415 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms