RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ECM2O94769 699 aaPredicted RBP25.19■■□□□ 1.62
VPS28-203ENST00000524521 WDR18Q9BV38 432 aa25.19■■□□□ 1.62
VPS28-203ENST00000524521 PUS7LQ9H0K6 701 aaKnown RBP25.19■■□□□ 1.62
VPS28-203ENST00000524521 RWDD1Q9H446 243 aaPredicted RBP25.19■■□□□ 1.62
VPS28-203ENST00000524521 AGTPBP1Q9UPW5 1226 aa25.19■■□□□ 1.62
VPS28-203ENST00000524521 PTPN22Q9Y2R2 807 aa25.19■■□□□ 1.62
VPS28-203ENST00000524521 SLC45A1Q9Y2W3 748 aa25.19■■□□□ 1.62
VPS28-203ENST00000524521 PTPRFP10586 1907 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 MYH7P12883 1935 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 GLRX3O76003 335 aaKnown RBP25.18■■□□□ 1.62
VPS28-203ENST00000524521 GH2P01242 217 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 MX1P20591 662 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 LACTBP83111 547 aaPredicted RBP25.18■■□□□ 1.62
VPS28-203ENST00000524521 CERKLQ49MI3 558 aaPredicted RBP25.18■■□□□ 1.62
VPS28-203ENST00000524521 TREML2Q5T2D2 321 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 PROCA1Q8NCQ7 364 aaPredicted RBP25.18■■□□□ 1.62
VPS28-203ENST00000524521 PI4K2BQ8TCG2 481 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 ATP8A2Q9NTI2 1148 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 SLC4A4Q9Y6R1 1079 aa25.18■■□□□ 1.62
VPS28-203ENST00000524521 ADGRA2Q96PE1 1338 aa25.17■■□□□ 1.62
VPS28-203ENST00000524521 CYP2D6P10635 497 aa25.17■■□□□ 1.62
VPS28-203ENST00000524521 EVX2Q03828 476 aa25.17■■□□□ 1.62
VPS28-203ENST00000524521 ARHGAP39Q9C0H5 1083 aa25.17■■□□□ 1.62
VPS28-203ENST00000524521 RNF113AO15541 343 aaKnown RBP25.16■■□□□ 1.62
VPS28-203ENST00000524521 SHMT1P34896 483 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 BACE1P56817 501 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 MTMR2Q13614 643 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 SH3D19Q5HYK7 790 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 NAV1Q8NEY1 1877 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 DDRGK1Q96HY6 314 aa25.16■■□□□ 1.62
VPS28-203ENST00000524521 USP17L10C9JJH3 530 aa25.15■■□□□ 1.62
VPS28-203ENST00000524521 GABPAQ06546 454 aa25.15■■□□□ 1.62
VPS28-203ENST00000524521 ABCB5Q2M3G0 1257 aa25.15■■□□□ 1.62
VPS28-203ENST00000524521 SMCR8Q8TEV9 937 aaPredicted RBP25.15■■□□□ 1.62
VPS28-203ENST00000524521 CABP5Q9NP86 173 aa25.15■■□□□ 1.62
VPS28-203ENST00000524521 TMOD4Q9NZQ9 345 aa25.15■■□□□ 1.62
VPS28-203ENST00000524521 C19orf81C9J6K1 198 aa25.14■■□□□ 1.62
VPS28-203ENST00000524521 ZFYP08048 801 aaPredicted RBP25.14■■□□□ 1.62
VPS28-203ENST00000524521 PABPC4Q13310 644 aaKnown RBP eCLIP25.14■■□□□ 1.62
VPS28-203ENST00000524521 RAB3GAP1Q15042 981 aa25.14■■□□□ 1.62
VPS28-203ENST00000524521 LRRFIP1Q32MZ4 808 aaKnown RBP25.14■■□□□ 1.62
VPS28-203ENST00000524521 APPBP2Q92624 585 aa25.14■■□□□ 1.62
VPS28-203ENST00000524521 OSBP2Q969R2 916 aa25.14■■□□□ 1.62
VPS28-203ENST00000524521 PNMA3Q9UL41 463 aa25.14■■□□□ 1.62
VPS28-203ENST00000524521 DDX60LQ5H9U9 1706 aaKnown RBP25.13■■□□□ 1.61
VPS28-203ENST00000524521 USP17L12C9JPN9 530 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 USP17L21D6R901 530 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 BCRP11274 1271 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 PSMC4P43686 418 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 SOX10P56693 466 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 B4GALNT3Q6L9W6 998 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 AMOTL1Q8IY63 956 aa25.13■■□□□ 1.61
VPS28-203ENST00000524521 STRBPQ96SI9 672 aaKnown RBP25.13■■□□□ 1.61
VPS28-203ENST00000524521 SALL3Q9BXA9 1300 aa25.12■■□□□ 1.61
VPS28-203ENST00000524521 FMNL1O95466 1100 aaPredicted RBP25.12■■□□□ 1.61
VPS28-203ENST00000524521 IGHDP01880 384 aa25.12■■□□□ 1.61
VPS28-203ENST00000524521 OSBPP22059 807 aa25.12■■□□□ 1.61
VPS28-203ENST00000524521 DYNLL2Q96FJ2 89 aa25.12■■□□□ 1.61
VPS28-203ENST00000524521 FSD1Q9BTV5 496 aa25.12■■□□□ 1.61
VPS28-203ENST00000524521 CYP2D7A0A087X1C5 515 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 MPHOSPH10O00566 681 aaKnown RBP25.11■■□□□ 1.61
VPS28-203ENST00000524521 GNRH1P01148 92 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 CTGFP29279 349 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 C12orf60Q5U649 245 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 SMC5Q8IY18 1101 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 SLC44A5Q8NCS7 719 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 LNPKQ9C0E8 428 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 STAP2Q9UGK3 403 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 SWAP70Q9UH65 585 aa25.11■■□□□ 1.61
VPS28-203ENST00000524521 BAZ2AQ9UIF9 1905 aaKnown RBP25.1■■□□□ 1.61
VPS28-203ENST00000524521 PDE1AP54750 535 aa25.1■■□□□ 1.61
VPS28-203ENST00000524521 TRIM47Q96LD4 638 aa25.1■■□□□ 1.61
VPS28-203ENST00000524521 ASCC2Q9H1I8 757 aaPredicted RBP25.1■■□□□ 1.61
VPS28-203ENST00000524521 PTCH2Q9Y6C5 1203 aa25.1■■□□□ 1.61
VPS28-203ENST00000524521 ZSWIM8A7E2V4 1837 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 LOC285556D6RIA3 1793 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 SMIM22K7EJ46 135 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 RGS19P49795 217 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 ZYXQ15942 572 aaKnown RBP25.09■■□□□ 1.61
VPS28-203ENST00000524521 CTR9Q6PD62 1173 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 USP17L2Q6R6M4 530 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 ANKRD13CQ8N6S4 541 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 FEZ1Q99689 392 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 EMILIN3Q9NT22 766 aa25.09■■□□□ 1.61
VPS28-203ENST00000524521 GSG1L2A8MUP6 293 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 M0R2C6 588 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 GPAA1O43292 621 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 HOXD10P28358 340 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 IRX6P78412 446 aaPredicted RBP25.08■■□□□ 1.61
VPS28-203ENST00000524521 IRX3P78415 501 aaPredicted RBP25.08■■□□□ 1.61
VPS28-203ENST00000524521 SEPT2Q15019 361 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 TAOK2Q9UL54 1235 aa25.08■■□□□ 1.61
VPS28-203ENST00000524521 HOXA7P31268 230 aaPredicted RBP25.07■■□□□ 1.6
VPS28-203ENST00000524521 GUCY1A2P33402 732 aa25.07■■□□□ 1.6
VPS28-203ENST00000524521 CDK8P49336 464 aa25.07■■□□□ 1.6
VPS28-203ENST00000524521 PRMT2P55345 433 aa25.07■■□□□ 1.6
VPS28-203ENST00000524521 FCGRTP55899 365 aa25.07■■□□□ 1.6
VPS28-203ENST00000524521 ACER1Q8TDN7 264 aa25.07■■□□□ 1.6
VPS28-203ENST00000524521 APPP05067 770 aa25.06■■□□□ 1.6
VPS28-203ENST00000524521 GNAT2P19087 354 aa25.06■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms