RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 SOCS4Q8WXH5 440 aa14.4□□□□□ -0.1
SDCBP-211ENST00000523441 MYLIPQ8WY64 445 aa14.4□□□□□ -0.1
SDCBP-211ENST00000523441 CDK5RAP2Q96SN8 1893 aa14.4□□□□□ -0.1
SDCBP-211ENST00000523441 LTBP2Q14767 1821 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 A0A1B0GUL7 405 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 CIAO1O76071 339 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 MAPK4P31152 587 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 ERVK-9P63128 1117 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 ERVK-24P63145 666 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 TFCP2Q12800 502 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 ANO1Q5XXA6 986 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 PLEKHH3Q7Z736 793 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 CRACR2BQ8N4Y2 399 aaPredicted RBP14.39□□□□□ -0.11
SDCBP-211ENST00000523441 XAGE2Q96GT9 111 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 NOL10Q9BSC4 688 aaKnown RBP14.39□□□□□ -0.11
SDCBP-211ENST00000523441 RBPJLQ9UBG7 517 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 VCANP13611 3396 aa14.39□□□□□ -0.11
SDCBP-211ENST00000523441 BACE1P56817 501 aa14.38□□□□□ -0.11
SDCBP-211ENST00000523441 RTP1P59025 263 aa14.38□□□□□ -0.11
SDCBP-211ENST00000523441 SHHQ15465 462 aa14.38□□□□□ -0.11
SDCBP-211ENST00000523441 SH3D19Q5HYK7 790 aa14.38□□□□□ -0.11
SDCBP-211ENST00000523441 MAPKAPK5Q8IW41 473 aa14.38□□□□□ -0.11
SDCBP-211ENST00000523441 FAM163AQ96GL9 167 aaPredicted RBP14.38□□□□□ -0.11
SDCBP-211ENST00000523441 SAP30BPQ9UHR5 308 aaKnown RBP14.38□□□□□ -0.11
SDCBP-211ENST00000523441 LDHCP07864 332 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 XRCC5P13010 732 aaKnown RBP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 GSTO1P78417 241 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 C9orf50Q5SZB4 431 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 GJC2Q5T442 439 aaPredicted RBP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 MFSD14CQ5VZR4 134 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 FAM109BQ6ICB4 259 aaPredicted RBP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 TRMT44Q8IYL2 757 aaKnown RBP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 EDC3Q96F86 508 aaKnown RBP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 APBA2Q99767 749 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 TBC1D2Q9BYX2 928 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 AATFQ9NY61 560 aaKnown RBP eCLIP14.37□□□□□ -0.11
SDCBP-211ENST00000523441 FLRT1Q9NZU1 646 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 HMG20BQ9P0W2 317 aa14.37□□□□□ -0.11
SDCBP-211ENST00000523441 MYO5AQ9Y4I1 1855 aaKnown RBP14.36□□□□□ -0.11
SDCBP-211ENST00000523441 USP17L10C9JJH3 530 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 CYP2C19P33261 490 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 MVPQ14764 893 aaKnown RBP14.36□□□□□ -0.11
SDCBP-211ENST00000523441 MORN1Q5T089 497 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 TGFBRAP1Q8WUH2 860 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 NSUN4Q96CB9 384 aaKnown RBP14.36□□□□□ -0.11
SDCBP-211ENST00000523441 SEMA6BQ9H3T3 888 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 PRDM6Q9NQX0 595 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 SNRKQ9NRH2 765 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 SMC4Q9NTJ3 1288 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 LRP2BPQ9P2M1 347 aa14.36□□□□□ -0.11
SDCBP-211ENST00000523441 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.36□□□□□ -0.11
SDCBP-211ENST00000523441 NPM3O75607 178 aaKnown RBP14.35□□□□□ -0.11
SDCBP-211ENST00000523441 ASNSP08243 561 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 FOSL2P15408 326 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 ATP2B2Q01814 1243 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 MAP2K5Q13163 448 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 SPATA5Q8NB90 893 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 USP6NLQ92738 828 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 BADQ92934 168 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 FEZ1Q99689 392 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 WDR18Q9BV38 432 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 PI4KBQ9UBF8 816 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 DDX20Q9UHI6 824 aaKnown RBP14.35□□□□□ -0.11
SDCBP-211ENST00000523441 RAPGEFL1Q9UHV5 662 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 HERC5Q9UII4 1024 aaKnown RBP14.35□□□□□ -0.11
SDCBP-211ENST00000523441 FBXO3Q9UK99 471 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 PALD1Q9ULE6 856 aa14.35□□□□□ -0.11
SDCBP-211ENST00000523441 COL2A1P02458 1487 aaPredicted RBP14.34□□□□□ -0.11
SDCBP-211ENST00000523441 HOXA7P31268 230 aaPredicted RBP14.34□□□□□ -0.11
SDCBP-211ENST00000523441 FERMT2Q96AC1 680 aa14.34□□□□□ -0.11
SDCBP-211ENST00000523441 EMILIN3Q9NT22 766 aa14.34□□□□□ -0.11
SDCBP-211ENST00000523441 ZBTB21Q9ULJ3 1066 aa14.34□□□□□ -0.11
SDCBP-211ENST00000523441 SPTBN5Q9NRC6 3674 aaKnown RBP14.34□□□□□ -0.11
SDCBP-211ENST00000523441 PRUNE2Q8WUY3 3088 aa14.34□□□□□ -0.11
SDCBP-211ENST00000523441 MYH1P12882 1939 aa14.33□□□□□ -0.11
SDCBP-211ENST00000523441 RLFQ13129 1914 aa14.33□□□□□ -0.11
SDCBP-211ENST00000523441 C19orf81C9J6K1 198 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 ANP32CO43423 234 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 POTEEQ6S8J3 1075 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 NPLOC4Q8TAT6 608 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 PPM1EQ8WY54 764 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 MEIS3Q99687 375 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 TTYH1Q9H313 450 aaPredicted RBP14.33□□□□□ -0.12
SDCBP-211ENST00000523441 DNAJC18Q9H819 358 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 AKAP2Q9Y2D5 859 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 IVNS1ABPQ9Y6Y0 642 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 FOCADQ5VW36 1801 aa14.33□□□□□ -0.12
SDCBP-211ENST00000523441 SRGAP3O43295 1099 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 CNMDO75829 334 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 GLRX3O76003 335 aaKnown RBP14.32□□□□□ -0.12
SDCBP-211ENST00000523441 GH2P01242 217 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 TRIM60Q495X7 471 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 NAA16Q6N069 864 aaPredicted RBP14.32□□□□□ -0.12
SDCBP-211ENST00000523441 USP17L2Q6R6M4 530 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 TRPV1Q8NER1 839 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 COPRSQ9NQ92 184 aa14.32□□□□□ -0.12
SDCBP-211ENST00000523441 PDS5AQ29RF7 1337 aaKnown RBP14.32□□□□□ -0.12
SDCBP-211ENST00000523441 KBTBD13C9JR72 458 aa14.31□□□□□ -0.12
SDCBP-211ENST00000523441 DNM1LO00429 736 aa14.31□□□□□ -0.12
SDCBP-211ENST00000523441 COL9A1P20849 921 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms