RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 ZBTB21Q9ULJ3 1066 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 MAP3K15Q6ZN16 1313 aa13.18□□□□□ -0.3
SYNPO-204ENST00000519664 SHROOM2Q13796 1616 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 CMA1P23946 247 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 TOB2Q14106 344 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 RBM26Q5T8P6 1007 aaKnown RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 VPS18Q9P253 973 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 CPSF1Q10570 1443 aaKnown RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 ABCA6Q8N139 1617 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 TACC1O75410 805 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 ARID4AP29374 1257 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 RNF187Q5TA31 235 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 SHTN1A0MZ66 631 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 SMYD4Q8IYR2 804 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 DYDC1Q8WWB3 177 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 CARMIL3Q8ND23 1372 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 WDHD1O75717 1129 aaPredicted RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 CAPN2P17655 700 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 SEPT7Q16181 437 aaKnown RBP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 HLFQ16534 295 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 RASSF4Q9H2L5 321 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 PLEKHA4Q9H4M7 779 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.17□□□□□ -0.3
SYNPO-204ENST00000519664 RSPH14Q9UHP6 348 aa13.17□□□□□ -0.3
SYNPO-204ENST00000519664 SPHKAPQ2M3C7 1700 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 TULP4Q9NRJ4 1543 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 SPDYE3A6NKU9 549 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 POTEB2H3BUK9 544 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 GIMAP7Q8NHV1 300 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 MCM3P25205 808 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 KRT83P78385 493 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 SP4Q02446 784 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 ZYXQ15942 572 aaKnown RBP13.16□□□□□ -0.3
SYNPO-204ENST00000519664 EHBP1Q8NDI1 1231 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 IFT81Q8WYA0 676 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 PIGBQ92521 554 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 ZSWIM5Q9P217 1185 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 ARHGAP6O43182 974 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 ATP2C2O75185 946 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 DYNLL1P63167 89 aaKnown RBP13.16□□□□□ -0.3
SYNPO-204ENST00000519664 PAK1Q13153 545 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 DCAF17Q5H9S7 520 aaPredicted RBP13.16□□□□□ -0.3
SYNPO-204ENST00000519664 CEP112Q8N8E3 955 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 NEK11Q8NG66 645 aa13.16□□□□□ -0.3
SYNPO-204ENST00000519664 LOC102724428A0A0B4J2F2 783 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 SIK1P57059 783 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 SPECC1LQ69YQ0 1117 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 NAA15Q9BXJ9 866 aaKnown RBP13.15□□□□□ -0.3
SYNPO-204ENST00000519664 RABEP2Q9H5N1 569 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 RCOR1Q9UKL0 485 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 RAPGEF1Q13905 1077 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 SV2BQ7L1I2 683 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 LINC00301Q8NCQ3 95 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 ERMNQ8TAM6 284 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 RASGRP4Q8TDF6 673 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 CETN1Q12798 172 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 INF2Q27J81 1249 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 NLRP10Q86W26 655 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 ZMYM6O95789 1325 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 ALKQ9UM73 1620 aa13.15□□□□□ -0.3
SYNPO-204ENST00000519664 RESTQ13127 1097 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 PTGDRQ13258 359 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 KRBA2Q6ZNG9 492 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 KIAA1524Q8TCG1 905 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 PGBD1Q96JS3 809 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 TTC14Q96N46 770 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 RTEL1Q9NZ71 1219 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 TAF6LQ9Y6J9 622 aa13.15□□□□□ -0.31
SYNPO-204ENST00000519664 CHMP2AO43633 222 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 PLCG2P16885 1265 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 RGS22Q8NE09 1264 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 ARHGAP31Q2M1Z3 1444 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 ATP1A3P13637 1013 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 CRKLP46109 303 aaKnown RBP13.14□□□□□ -0.31
SYNPO-204ENST00000519664 SLC39A14Q15043 492 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 NELFCDQ8IXH7 590 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 NELFBQ8WX92 580 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 ZSCAN10Q96SZ4 725 aaPredicted RBP13.14□□□□□ -0.31
SYNPO-204ENST00000519664 FAM207AQ9NSI2 230 aaPredicted RBP13.14□□□□□ -0.31
SYNPO-204ENST00000519664 IMPACTQ9P2X3 320 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 LMTK3Q96Q04 1460 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 BICDL2A1A5D9 508 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 UBE3CQ15386 1083 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 LCORLQ8N3X6 602 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 OGFOD1Q8N543 542 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 LRRC27Q9C0I9 530 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 PIH1D3Q9NQM4 214 aaKnown RBP13.14□□□□□ -0.31
SYNPO-204ENST00000519664 BIN2Q9UBW5 565 aaPredicted RBP13.14□□□□□ -0.31
SYNPO-204ENST00000519664 LRWD1Q9UFC0 647 aa13.14□□□□□ -0.31
SYNPO-204ENST00000519664 PLCD1P51178 756 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 KIF23Q02241 960 aaPredicted RBP13.13□□□□□ -0.31
SYNPO-204ENST00000519664 PNMA1Q8ND90 353 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 TTLL11Q8NHH1 800 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 CNKSR2Q8WXI2 1034 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 MRFAP1L1Q96HT8 127 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 PLCD4Q9BRC7 762 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 H7C1W4 665 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 ADD2P35612 726 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 MCAMP43121 646 aa13.13□□□□□ -0.31
SYNPO-204ENST00000519664 CKAP4Q07065 602 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms