RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 AKAP2Q9Y2D5 859 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 NUB1Q9Y5A7 615 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 ACTL7BQ9Y614 415 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 USP3Q9Y6I4 520 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 CNTNAP4Q9C0A0 1308 aa0.83□□□□□ -2.28
RNU4-54P-201ENST00000516428 TEX51A0A1B0GUA7 166 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM238LA0A1B0GVL6 79 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZC3H12DA2A288 527 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ANKRD62A6NC57 917 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLEKHD1A6NEE1 506 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 WTIPA6NIX2 430 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM88BA6NKF7 163 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM170BA6NMN3 283 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 POM121CA8CG34 1229 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NPIPB6E9PJ23 425 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 EREGO14944 169 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DDX3YO15523 660 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SMARCA5O60264 1052 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PSPNO60542 156 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PPFIA4O75335 1185 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TBC1D8O95759 1140 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADRB1P08588 477 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CD8BP10966 210 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NAT2P11245 290 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 HCLS1P14317 486 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DRD2P14416 443 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NPR3P17342 541 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ITPKAP23677 461 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MPSTP25325 297 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SSFA2P28290 1259 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 GBP1P32455 592 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CAP2P40123 477 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CCNFP41002 786 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 GDF5P43026 501 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FCGRTP55899 365 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PCBP3P57721 371 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 RPS26P62854 115 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PURAQ00577 322 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 XPCQ01831 940 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLP2Q04941 152 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TTLL4Q14679 1199 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 COL19A1Q14993 1142 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NR1I3Q14994 352 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NR0B2Q15466 257 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZXDCQ2QGD7 858 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TSNAXIP1Q2TAA8 658 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 KIF4BQ2VIQ3 1234 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 LRRFIP1Q32MZ4 808 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDCA8Q53HL2 280 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 UBXN11Q5T124 520 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF648Q5T619 568 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MAP1SQ66K74 1059 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLC6A19Q695T7 634 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CDPF1Q6NVV7 123 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PRPF40BQ6NWY9 871 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 GALNT18Q6P9A2 607 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MPRIPQ6WCQ1 1025 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DNAJC14Q6Y2X3 702 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ATG14Q6ZNE5 492 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 C22orf34Q6ZV56 151 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ILDR2Q71H61 639 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SV2BQ7L1I2 683 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PLEKHH3Q7Z736 793 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NOP9Q86U38 636 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CERS3Q8IU89 383 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SULF2Q8IWU5 870 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM9AQ8IZU1 332 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 GJD3Q8N144 294 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CRACR2BQ8N4Y2 399 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TOP6BLQ8N6T0 577 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 NAT16Q8N8M0 369 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 BAHD1Q8TBE0 780 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 KISS1RQ969F8 398 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ALKBH8Q96BT7 664 aaKnown RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SIGLEC10Q96LC7 697 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DHRS1Q96LJ7 313 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TEPSINQ96N21 525 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FANCD2OSQ96PS1 177 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 UCN2Q96RP3 112 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 WRNIP1Q96S55 665 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DIRC2Q96SL1 478 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PSMD1Q99460 953 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DUSP23Q9BVJ7 150 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 HIRIP3Q9BW71 556 aaPredicted RBP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 BCL2L13Q9BXK5 485 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MIR1-1HGQ9H1L0 117 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZNF576Q9H609 170 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 LGR6Q9HBX8 967 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 MRS2Q9HD23 443 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 PARD6AQ9NPB6 346 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 CRTAC1Q9NQ79 661 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM105AQ9NUU6 356 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 SLAMF8Q9P0V8 285 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 TMEM63CQ9P1W3 806 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 FAM8A1Q9UBU6 413 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DUSP13Q9UII6 198 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ZMYM5Q9UJ78 669 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 DCTN4Q9UJW0 460 aa0.82□□□□□ -2.28
RNU4-54P-201ENST00000516428 ADAM30Q9UKF2 790 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms