RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 NOD1Q9Y239 953 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 IVNS1ABPQ9Y6Y0 642 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 YEATS2Q9ULM3 1422 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 H7C1D1 291 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 SYF2O95926 243 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 LONP1P36776 959 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 C8orf74Q6P047 294 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 SECISBP2LQ93073 1101 aaKnown RBP9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 SPDL1Q96EA4 605 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 TTC21BQ7Z4L5 1316 aa9.7□□□□□ -0.86
LIMCH1-218ENST00000513024 NCBP1Q09161 790 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 PSMD2Q13200 908 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 NUDCD3Q8IVD9 361 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 IFT20Q8IY31 132 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 GPR161Q8N6U8 529 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 C8orf58Q8NAV2 365 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 KAT14Q9H8E8 782 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 ARHGEF10O15013 1369 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 SBNO2Q9Y2G9 1366 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 INPP1P49441 399 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 MYL5Q02045 173 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 APOBRQ0VD83 1088 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 GRAMD4Q6IC98 578 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF804AQ7Z570 1209 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 PLEKHM2Q8IWE5 1019 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 NAPGQ99747 312 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 TSGA10Q9BZW7 698 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 PPANQ9NQ55 473 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 KLHL14Q9P2G3 628 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 IL16Q14005 1332 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 TRIM75PA6NK02 468 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 NMIQ13287 307 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 TTF1Q15361 905 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 RTN1Q16799 776 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 FAM196AQ6ZSG2 479 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 BICD1Q96G01 975 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 SPC25Q9HBM1 224 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 SSX2IPQ9Y2D8 614 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 PTPDC1A2A3K4 754 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 BAG2O95816 211 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 GJC1P36383 396 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 MCMDC2Q4G0Z9 681 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 CAPS2Q9BXY5 557 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 RAD50Q92878 1312 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 APOEP02649 317 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 CCT5P48643 541 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 RBM26Q5T8P6 1007 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 ARMCX6Q7L4S7 300 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 TBC1D5Q92609 795 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 ACSBG1Q96GR2 724 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 DCTPP1Q9H773 170 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 MED4Q9NPJ6 270 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 TXNDC16Q9P2K2 825 aa9.69□□□□□ -0.86
LIMCH1-218ENST00000513024 CFAP74Q9C0B2 1584 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 TMEM110-MUSTN1A8MSY1 372 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 AKR1B15C9JRZ8 316 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CHUKO15111 745 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 BMP15O95972 392 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SKIP12755 728 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CCT6AP40227 531 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 MAGEA9P43362 315 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF445P59923 1031 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SF3A3Q12874 501 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 IDI1Q13907 227 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SH2D4AQ9H788 454 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SLAIN2Q9P270 581 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ACTN4O43707 911 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 TBCAO75347 108 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SERPINI2O75830 405 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 PLCB3Q01970 1234 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 GSTA5Q7RTV2 222 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 PA2G4Q9UQ80 394 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 MYO1CO00159 1063 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ZNF500O60304 480 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 RNASE9P60153 205 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ATP8B2P98198 1209 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 TAF11Q15544 211 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 EAPPQ56P03 285 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CREB3L3Q68CJ9 461 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ARHGAP27Q6ZUM4 889 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CNGA4Q8IV77 575 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 NIM1KQ8IY84 436 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 TTC16Q8NEE8 873 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CHRNA2Q15822 529 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 MRPL50Q8N5N7 158 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 CCDC68Q9H2F9 335 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 ZBTB40Q9NUA8 1239 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 SUFUQ9UMX1 484 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 PIK3R4Q99570 1358 aa9.68□□□□□ -0.86
LIMCH1-218ENST00000513024 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 CHMLP26374 656 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 STXBP4Q6ZWJ1 553 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 SND1Q7KZF4 910 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 YIPF3Q9GZM5 350 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 CBX8Q9HC52 389 aa9.67□□□□□ -0.86
LIMCH1-218ENST00000513024 TBX22Q9Y458 520 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms